Detailed information on CNT30304204


BLAST search results

BLAST vs Swiss-Prot:
sp|P24067|BIP2_MAIZE, E-value = 9e-38

BLAST vs NONCODE:
NONATHT003784, E-value = 2e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184977Triticum aestivumSecale cereale96.9399.5598.19221forward
CNT30565287Triticum aestivumActinidia chinensis71.0548.886.42162forward
CNT30726082Triticum aestivumLupinus angustifolius54.3927.5684.68124forward

Expression of CNT30304204

Peptides detected in this lncRNA

>peptide 1 (38 aa)
WSRHRPRRSRCFPALQLRRQQPHQGSHPCLAPCRQSSP*

>peptide 2 (75 aa)
LGLVTALAAQDASLHCSSEGNSLIRVHTLVWLLAVKVVPEELLDLGNPGAASNKNNLVDLGLLEASNHTSILGRLS

>peptide 3 (36 aa)
LVSSPPSPLKMLPCTAAPKATASSGFTPLFGSLPSK*

Sequence

>CNT30304204
CTTGGTCTCGTCACCGCCCTCGCCGCTCAAGATGCTTCCCTGCACTGCAGCTCCGAAGGCAACAGCCTCATCAGGGTTCACACCCTTGTTTGGCTCCTTG
CCGTCAAAGTAGTCCCTGAGGAGCTGCTGGACCTTGGGAATCCTGGTGCTGCCTCCAACAAGAACAATCTCGTGGATCTGGGTCTTCTCGAGGCCAGCAA
TCACACCAGCATCCTTGGTCGCCTGTCT