Detailed information on CNT30557828


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522927Panicum halliiSetaria italica46.6148.1397.09103forward
CNT30222502Panicum halliiHordeum vulgare25.7922.0991.2357forward
CNT30135077Panicum halliiLolium perenne44.3416.6187.7698forward
CNT304519Panicum halliiZea mays45.73799.01101forward
CNT30682196Panicum halliiTriticum urartu44.3444.1491.8498forward

Expression of CNT30557828

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LDVGLAGESDELREPGLVDGGVAAGLGVPALLVQHVPRDGHQVRPVRVRRVVHLVAAAAPSSSLSG*

>peptide 2 (72 aa)
WTLVSPASPMSFASPALLTAESPRDSGFRRCSFSTCRVMVIRSVRCASAAWSISSPPPRPPPRSPARQASDRS

Sequence

>CNT30557828
CCTGGACGTTGGTCTCGCCGGCGAGTCCGATGAGCTTCGCGAGCCCGGCCTTGTTGACGGCGGAGTCGCCGCGGGACTCGGGGTTCCGGCGCTGCTCGTT
CAGCACGTGCCGCGTGATGGTCATCAGGTCCGTCCGGTGCGCGTCCGCCGCGTGGTCCATCTCGTCGCCGCCGCCGCGCCCTCCTCCTCGCTCTCCGGCT
AGACAAGCTAGTGATCGCAGT