Detailed information on CNT30522927


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43139|F16P2_SACHY, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30135077Setaria italicaLolium perenne59.8121.6988.28128forward
CNT304519Setaria italicaZea mays67.2952.7597.92144forward
CNT30681820Setaria italicaTriticum urartu59.3539.3292.13127forward
CNT30557828Setaria italicaPanicum hallii48.1346.6197.09103forward

Expression of CNT30522927

Peptides detected in this lncRNA

>peptide 1 (66 aa)
TLLTAEDDVGEQDGEVAAGLGVPALLVQHVPRDGHQVRPVRVRLVVHLVPLLFAAAAPSSSSSSAG*

>peptide 2 (61 aa)
MWESRMVKSPRDSGYRLCSFSTCRVMVIRSVRCASASWSISSPSSSPPPRPPLPPLRPASR*

Sequence

>CNT30522927
GACCTTGCTGACGGCGGAGGACGATGTGGGAGAGCAGGATGGTGAAGTCGCCGCGGGACTCGGGGTACCGGCTCTGCTCGTTCAGCACGTGCCGCGTGAT
GGTCATCAGGTCCGTCCGGTGCGCGTCCGCCTCGTGGTCCATCTCGTCCCCCTCCTCTTCGCCGCCGCCGCGCCCTCCTCTTCCTCCTCTTCGGCCGGCT
AGCAGGTGATCGCG