CANTATAdb - search

Detailed information on CNT30135077

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522927	Lolium perenne	Setaria italica	21.69	59.81	88.28	128	forward
CNT304519	Lolium perenne	Zea mays	21.69	46.89	88.28	128	forward
CNT30681820	Lolium perenne	Triticum urartu	22.03	40.25	93.08	130	forward
CNT30557828	Lolium perenne	Panicum hallii	16.61	44.34	87.76	98	forward

Expression of CNT30135077

Peptides detected in this lncRNA

>peptide 1 (36 aa)
EKKTHTVRPLLTRALTNTSLDRMRRTCIRGRCGTGG*

>peptide 2 (67 aa)
EEDSYGAAAADEGIDEHLVGQDATNLHPRTMWDRRIVRSPRDSGNLLCSLSTYRVMVMRSVRYVSAA*

Sequence

>CNT30135077
GAGAAGAAGACTCATACGGTGCGGCCGCTGCTGACGAGGGCATTGACGAACACCTCGTTGGACAGGATGCGACGAACTTGCATCCGAGGACGATGTGGGA
CAGGAGGATAGTGAGGTCGCCGCGCGACTCCGGGAACCTGCTCTGCTCGTTGAGCACGTACCGCGTGATGGTCATGAGGTCCGTCCGGTACGTGTCCGCC
GCGTGATCCATCTTCCCGGCCGGCGGTCGATCGATGATATCCTCTCCTCACCTGCACTCTCTCGCTTAGCTCGGCGACCTGGTTATGGTTGGAGCGCAGA
CCGTGGAAGTGAACGATCTATCTATGCTGGTGAAGGCATGTACGGCGCGGGAACTGGGGTGGCTGTGAACGTAGCGTGACGTGCAGGTGATCTGCTTGGT
TTTGGTAGGTAGCGGGAGGAGGAAGTGAGGCTGGGAGGAGAGGGGCGTGGGGCTCCAATGGAACCGGCGCGCAGGCCTATCTTCTCTATCCGCGATGGCT
GGTAGCGCGATGGCCGTGTGCGTCTGTGGCCGTCGCCTACTGAGGTGAGAGGAGGGCGGGGTTTTGTCCTGCGCTCGCAACGTAACCGTC