Detailed information on CNT30363075


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZNS0|PLT3_ARATH, E-value = 8e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555855Sorghum bicolorOryza glaberrima24.0324.6583.1142forward
CNT30370787Sorghum bicolorOryza glumipatula45.1839.7383.9267forward
CNT30576940Sorghum bicolorOryza barthii30.821.5985.16182forward

Expression of CNT30363075

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRATIIPPALVSSRGRRPIAVCVGSPGLGKR*

>peptide 2 (62 aa)
RKKLPPMVIPFERDRKVMEITALVTRLHAMPTAKPSARTCSGNISELYTPVMGPSPIEKKAT*

>peptide 3 (80 aa)
MPHDGEPRPEADESYDHSTRAGQQQRPTPDSSMRRIAGIGEKMSAFHTCISPPFRSFGTVTTSPSRSSLAQPWRPRGGPS*

>peptide 4 (35 aa)
EEEAAADGDTLREGQEGHGDHGAGNAVARHADREA*

>peptide 5 (34 aa)
MTSHRGDSGMQNTMSASRADGAAPMPSMTRQPRWS

Sequence

>CNT30363075
GAGGAAGAAGCTGCCGCCGATGGTGATACCCTTCGAGAGGGACAGGAAGGTCATGGAGATCACGGCGCTGGTAACGCGGTTGCACGCCATGCCGACCGCG
AAGCCTAGCGCGCGCACCTGCAGTGGGAATATCTCCGAGTTGTACACGCCCGTGATGGGGCCGAGCCCTATCGAGAAGAAGGCGACGTAGGCCAGCGTGG
ACGCGATGCACAGAGCTACGGCCGACGGGATCTTGGCGTCCGGGTGATGCCCCACGACGGTGAGCCCCGTCCCGAGGCCGATGAGAGCTACGATCATTCC
ACCCGCGCTGGTCAGCAGCAGAGGCCGACGCCCGATAGCAGTATGCGTCGGATCGCCGGGATTGGGGAAAAGATGAGCGCCTTCCACACCTGCATCTCGC
CACCGTTCCGCTCCTTTGGTACGGTGACCACGTCTCCGTCGAGGTCTTCTCTAGCACAGCCCTGGCGTCCGCGAGGCGGCCCTTCATGACAAGCCACCGA
GGCGACTCGGGCATGCAGAACACCATGAGCGCGAGCAGGGCGGACGGCGCTGCGCCGATGCCGAGCATGACACGCCAGCCGAGGTGGAGCG