Detailed information on CNT30521812


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ80|PLT5_ARATH, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30559342Setaria italicaActinidia chinensis28.1524.682.51183forward
CNT30555855Setaria italicaOryza glaberrima25.0828.387.12163forward
CNT30340303Setaria italicaEragrostis tef26.4616.2191.28172forward
CNT30361981Setaria italicaSorghum bicolor18.7727.1786.89122forward
CNT30705241Setaria italicaPrunus avium23.3813.5480.26152forward
CNT30576940Setaria italicaOryza barthii25.0819.3487.12163forward
CNT30116150Setaria italicaOryza nivara37.3838.6991.77243forward

Expression of CNT30521812

Peptides detected in this lncRNA

>peptide 1 (50 aa)
AGILKDSPHQRKKIYSSTVSSKLYGTASSTLWMTCVYGHVVHGWHFTQCC*

>peptide 2 (42 aa)
MTSCSRGGRRPRQHRHRRRRPCRRASQCPPGSCPSSPAGRST*

>peptide 3 (99 aa)
MVMALERERKDMVDRKAREGEVGDVAEEDAEVVEHLREGCEEAAGGGGRDLGGVDGGDHEREADADAGHEAADHEERVVRGQAHEKRAREEDCGRQHHGV

Sequence

>CNT30521812
CGCAGGGATTCTAAAAGATTCACCACACCAAAGAAAAAAAATATACAGTAGTACAGTATCATCGAAGCTTTACGGAACAGCTTCGTCCACACTCTGGATG
ACATGTGTGTACGGACACGTTGTGCATGGATGGCACTTTACTCAGTGCTGCTGAGCACTGAGCTCAGTGGATGACTTCTTGCTCTCGTGGCGGCCGGCGG
CCACGACAACACCGTCATCGTCGTCGGCGTCCTTGCCGAAGAGCTTCGCAGTGTCCTCCAGGCTCTTGCCCATCGTCTCCGGCAGGAAGAAGTACATGAA
CACCCACCCCGCCGCCATGATGCAGGCGTAGAGGTAGAAGCTCCCCGCGATGGTGATGGCGTTGGAGAGGGAGAGGAAGGACATGGTGGACAGGAAGGCG
CGCGAAGGCGAAGTTGGAGACGTAGCCGAGGAGGATGCCGAAGTTGTTGAACACCTCCGGGAAGGATGTGAGGAAGCCGCGGGCGGAGGTGGGCGCGACC
TCGGCGGTGTAGACGGGGGCGATCATGAGCGCGAAGCCGACGCCGATGCCGGCCACGAAGCGGCCGACCATGAGGAGCGCGTAGTCCGGGGCCAGGCCCA
TGAGAAGCGCGCCCGTGAAGAAGATTGCGGCCGCCAGCACCATGGTGTAG