Detailed information on CNT30370787


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ80|PLT5_ARATH, E-value = 3e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555855Oryza glumipatulaOryza glaberrima22.4726.22100151forward
CNT30363075Oryza glumipatulaSorghum bicolor39.7345.1883.9267forward
CNT30576940Oryza glumipatulaOryza barthii33.3326.57100224forward
CNT30117212Oryza glumipatulaOryza nivara17.8624.74100120forward

Expression of CNT30370787

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLRPMAQGILASGCWPTTVSPAPRRWLSSVMPALLNTRGL*

>peptide 2 (84 aa)
GVEEHPGERGDAGVEEEAAADGDGLGQRQEGHGDDAAGDAVGGDAERAAQRAHLEREDLRAVHPRDGAKADGEEGDVGEGGGDA*

>peptide 3 (56 aa)
MVMALDSDRKVMEMTPLVTRLAATPSEQPSARTWSGKISELYTHVMGPRPMEKKAT*

>peptide 4 (94 aa)
MPDACWKKWMPMPDSRMRRMAGVGDRMSSFHTRFSFPLPLLGTVTTSPSSSSGMPAAALMSARRSAASSAVSEVFSSTTLASARRPFMTSHRGDS

Sequence

>CNT30370787
GGTGTAGAAGAACACCCAGGCGAGCGCGGCGATGCCGGAGTAGAGGAAGAAGCTGCCGCCGATGGTGATGGCCTTGGACAGCGACAGGAAGGTCATGGAG
ATGACGCCGCTGGTGACGCGGTTGGCGGCGACGCCGAGCGAGCAGCCCAGCGCGCGCACCTGGAGCGGGAAGATCTCCGAGCTGTACACCCACGTGATGG
GGCCAAGGCCGATGGAGAAGAAGGCGACGTAGGCGAGGGTGGAGGCGATGCTTAGGCCGATGGCCCAAGGTATCTTGGCGTCGGGGTGCTGGCCGACGAC
GGTGAGCCCGGCGCCGAGGAGGTGGTTGTCGTCGGTGATGCCGGCGCTCTTGAACACGCGCGGGCTGTAGAGCACGACGGAGTCGATGCCCGACGCCTGC
TGGAAGAAGTGGATGCCGATGCCCGACAGCAGGATGCGCCGCATGGCCGGGGTCGGGGACAGGATGAGCTCCTTCCACACCCGCTTCTCGTTTCCGCTCC
CTCTCTTGGGGACGGTCACCACGTCGCCGTCGAGCTCCTCGGGGATGCCGGCGGCGGCCTTGATGTCGGCCAGGCGCTCCGCGGCCTCCTCCGCCGTGTC
GGAGGTCTTCTCCAGCACCACCTTGGCGTCCGCGAGGCGTCCCTTCATGACCAGCCACCGCGGCGACTCCGG