CANTATAdb - search

Detailed information on CNT30555088

BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 5e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696568	Oryza glaberrima	Oryza sativa	52.57	50.66	99.29	420	forward
CNT30348036	Oryza glaberrima	Eragrostis tef	32.04	45.8	89.06	256	forward
CNT30365845	Oryza glaberrima	Sorghum bicolor	26.78	45.53	83.18	214	forward
CNT30596962	Oryza glaberrima	Oryza meridionalis	57.45	55.5	93.9	459	forward
CNT30371146	Oryza glaberrima	Oryza glumipatula	98.25	97.27	99.11	785	forward
CNT30103575	Oryza glaberrima	Oryza rufipogon	47.93	53.72	99.74	383	forward

Expression of CNT30555088

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MRLRSMGMLRMRLRSMGRLSLMPSTLALMAVQRQTAASRSTRPSSSEQQGSYGDTAPTLALTRPSTLAHTCSFSASRGHDDPPP*

Sequence

>CNT30555088
GCAACTTCGATTGACATCTGAACCATAACAGATCATAAGCACAAAAAATACATATATATTGACCAGTAAACTGATCACCCTGGGTCACAACCAACACTTA
CACATGTAATAATACATACTGGCCAATGGTTTTTTCCCAGAACTAATTAAACTTTGCAAGCATAAACAAAGACAAAACAGACAGTTTCCAAAGTTCAGAG
AGTTCAGACTGCTCACAGTAAACCAACCAACAAAAACATGTAGACGACGTGTAGCACACTGTCAATCGATCGATCGATCGATCGGCTGCAGTGTCCCAAT
GTGATTAAGCACACTGGTAGTCGGATGGGCAGATCTTGCCGCAGTTGTTGAGGATGAGGCTGAGGTCGATGGGGATGTTGAGGATGAGGCTGAGGTCGAT
GGGGAGGTTGAGCTTGATGCCCAGCACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCGTCGAGCAGCGAGCAGCAG
GGCTCGTACGGCGACACGGCGCCGACCTTGGCCTTGACGAGGCCCAGCACGTTGGCGCACACGTGCAGCTTCAGCGCGTCGCGCGGGCACGACGACCCGC
CGCCGTAGTGAGGCGTCGGCGGCTTCGGCCTCGGCGCCGGTGGCTTCGGCGAAGGGCAGTCCGGGCAGGCCACGGCCATGGCCACCACCAGGAGGCTCAC
CGCCAGCACAAGCGCCGCCTTCGCCGCCATTGCTGCAACTAATCGAGCTAGTGTAGCTAGCTAGTAGCTCGAGCTTGCTGCTGCTTGGTTGCTGTGGTT