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Detailed information on CNT30371146


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555088Oryza glumipatulaOryza glaberrima96.039799.1775forward
CNT30348035Oryza glumipatulaEragrostis tef29.8630.289.21241forward
CNT30596962Oryza glumipatulaOryza meridionalis56.1354.7894.7453forward

Expression of CNT30371146

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MRLRSMGMLRLRSMGRLSLMPSTLALMAVQRQTAASRSTRPSSSEQQGSYGDTAPTLALTRPSTLAHTCSFSASRGHDDPPP*

Sequence

>CNT30371146
CTAATTGCAACTTCGATTGACATCTGAACCATAACAGATCATAAGCACAAAAAATACATATATATTGACCAGTAAACTGATCACCCGGGGTCACAACCAA
CACTTACACATGTAATAATACATACTGGCCAATGGTTTTTTCCCAGAACTAATTAAACTTTGCAAGCATAAACAAAGACAAAACAGACAGTTTCCAAAGT
TCAGAGAGTTCAGACTGCTCACAGTAAACCAACCAACAAAAACATGTAGACGACGTGTAGCACACTGTCAATCGATCGATCGATCGATCGGCTGCAGTGT
CCCAATGTGATTAAGCACACTGGTAGTCGGATGGGCAGATCTTGCCGCAGTTGTTGAGGATGAGGCTGAGGTCGATGGGGATGTTGAGGCTGAGGTCGAT
GGGGAGGTTGAGCTTGATGCCCAGCACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCGTCGAGCAGCGAGCAGCAG
GGCTCGTACGGCGACACGGCGCCGACCTTGGCCTTGACGAGGCCCAGCACGTTGGCGCACACGTGCAGCTTCAGCGCGTCGCGCGGGCACGACGACCCGC
CGCCGTAGTGAGGCGTCGGCGGCTTCGGCCTCGGCGCCGGTGGCTTCGGCGAAGGGCAGTCCGGGCAGGCCACGGCCATGGCCACCACCAGGAGGCTCAC
CGCCAGCACAAGCGCCGCCTTCGCCGCCATTGCTGCAACTAATCGAGCTAGTGTAGCTAGCTAGTAGCTCGAGCTTGCTGCTGCTGCTGCTGCTTGGTTG
CTGTGGT