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Detailed information on CNT30596962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555088Oryza meridionalisOryza glaberrima55.557.4593.9459forward
CNT30348035Oryza meridionalisEragrostis tef29.1430.288.38241forward
CNT30371146Oryza meridionalisOryza glumipatula54.7856.1394.7453forward

Expression of CNT30596962

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MRLRSMGRMRLRSMGRLSLMPSTLALMAVQRQTAASRSTRPSSSEQQGSYGATAPTLALTRPSTLAHTCSFSASRGHDDPPP*

Sequence

>CNT30596962
ATACATATATATTGACCAGTAAACTGATCACCCGGGGTCACAACCAACACTTACACATGTAATAATACATACTGGCCAATGGCTATTTCCCAGAACTAAT
TAAACTTTGCAAGCATAAACAAAGACAAAACAGACAGTTTCCACAGTTCAGAGAGTTCAGACTGATAGTAAACCAACCAAACAAAACATGTAGACAACGT
GTAGCACACTGTCGATCGATCGATCGGCTGCAGTGTCCCAATGTGATTAGGCACACTGGTAGTCGGATGGGCAGATCTTGCCGCAGTTGTTGAGGATGAG
GCTGAGATCGNGATCGGCTGCAGTGTCCCAATGTGATTAGGCACACTGGTAGTCGGATGGGCAGATCTTGCCGCAGTTGTTGAGGATGAGGCTGAGATCG
ATGGGGAGGATGAGGCTGAGATCGATGGGGAGGTTGAGCTTGATGCCCAGCACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGA
CGAGGCCGTCGAGCAGCGAGCAGCAGGGCTCGTACGGCGCCACCGCGCCGACCTTGGCCTTGACGAGGCCCAGCACGTTGGCGCACACGTGCAGCTTCAG
CGCGTCGCGCGGGCACGACGACCCGCCGCCGTAGTGAGGCGTCGGCGGCTTCGGCCTTGGCGCCGGGCAGTCCGGGCAGGCCACGGCCACGGCCACCACC
AGGAGGCTCACCGCCAGCACAAGCGCCGCCTTCGCCGCCATTGCTGCAATCAACCAAGCTCTAGCTAAGCTAGTCGATTTGCTAGTGTAGCTCGAGCTTG
CTGCTGGTGGTGGTTGCTGTGGTTGGG