Detailed information on CNT30554200


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596455Oryza glaberrimaOryza meridionalis27.3139.791.26183forward
CNT30370422Oryza glaberrimaOryza glumipatula69.2570.7399.57464forward
CNT30102268Oryza glaberrimaOryza rufipogon47.1657.6699.68316forward
CNT30576740Oryza glaberrimaOryza barthii65.0764.599.77436forward
CNT30116911Oryza glaberrimaOryza nivara22.3943.1100150forward

Expression of CNT30554200

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MERVSSEGGVEGEEWAGGGSGGWGEEGAGGGGRRWEGEEGVVEEVGVAVVRTHGGRRRWSSLLSCRWSGSVKETW*

>peptide 2 (40 aa)
LGLGFELAVILQGLVMELVLDLLVVVVVGGREVLLPGVGV*

>peptide 3 (63 aa)
MGRWRKRRVGRGRGRRRRTAVGRGRRGRRGGGRSGGENSWWPAAVELSAQLPLEWECEGDLVIY

Sequence

>CNT30554200
CCTTGGCCTTGGTTTTGAGCTTGCTGTGATCCTGCAGGGCCTTGTGATGGAGTTGGTCCTCGATCTCCTCGTCGTCGTCGTCGTCGGTGGCAGAGAAGTC
CTCCTCCCAGGTGTAGGAGTGTGACCATGGCTCGAGGCAACCCTTGCCCTTGAGGTGGGTGGCCCACTTGAGCTTGGTGGCAGCAGCGGAGGCGGTCTTG
GCCTTGGCCTCCCACTTCCACTTGCGGTCGAATCCATCGTCGTAGGGGGAGTCGAGCTCAGCCTCCCACTTGAGCACCCTCTCGCCGGCGCGAGGCTTGT
CCTCGGTGGTCCACTTGACCTTGCGGCCGGTGGACTCGGTGACATAGGTGCACTTCCTGCTGGTGGGCCTGGGGTGTGGGGCGCGGGCGGCGAGGGCGAG
CTCGAGTTGGGAGACGCGGTCGGTGAGGGGGTGGAGATGGAAAGGGTCAGCAGCGAAGGGGGAGTCGAGGGCGAAGAATGGGCAGGTGGAGGAAGCGGCG
GGTGGGGAGAGGAAGGGGCAGGAGGAGGAGGACGGCGGTGGGAAGGGGAAGAAGGGGTCGTCGAGGAGGTGGGCGTAGCGGTGGTGAGAACTCATGGTGG
CCGGCGGCGGTGGAGCTCTCTGCTCAGCTGCCGCTGGAGTGGGAGTGTGAAGGAGACTTGGTGATCTACT