Detailed information on CNT30576740


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554200Oryza barthiiOryza glaberrima62.7263.28100424forward
CNT30596455Oryza barthiiOryza meridionalis25.337.0991.23171forward
CNT30370422Oryza barthiiOryza glumipatula60.6562.599.51410forward
CNT30102268Oryza barthiiOryza rufipogon47.1958.2199.69319forward
CNT30116911Oryza barthiiOryza nivara26.3351.1598.88178forward

Expression of CNT30576740

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGRRRRTAVGRGRRGRRGGGRSGGENSWWPAAVELSAQLPLEWECDG

>peptide 2 (60 aa)
MERVSSEGGVEGEEWAGGGGRRWEGEEGVVEEVGVAVVRTHGGRRRWSSLLSCRWSGSVTE

>peptide 3 (41 aa)
VLGLGFELAVILQGLVMELVLDLLVVVVVGGREVLLPGVGV*

Sequence

>CNT30576740
CGTCCTTGGCCTTGGTTTTGAGCTTGCTGTGATCCTGCAGGGCCTTGTGATGGAGTTGGTCCTCGATCTCCTCGTCGTCGTCGTCGTCGGTGGCAGAGAA
GTCCTCCTCCCAGGTGTAGGAGTGTGACCATGGCTCGAGGCAACCCTTGCCCTTGAGGTGGGTGGCCCACTTGAGCTTGGTGGCAGCAGCGGAGGCGGTC
TTGGCCTTGGCCTCCCACTTCCACTTGCGGTCGAATCCATCGTCGTAGGGGGAGTCGAGCTCAGCCTCCCACTTGAGCACCCTCTCGCCGGCGCGAGGCT
TGTCCTCGGTGGTCCACTTGACCTTGCGGCCGGTGGACTCGGTGACATAGGTGCACTTCCTGCTGGTGGGCCTGGGGTGTGGGGCGCGGGCGGCGAGGGC
GAGCTCGAGTTGGGAGACGCGGTCGGTGAGGGTGTGGAGGAGGAAGGGGTCGAGGAGGGAGCTAGTGGGCGGCGTGGGGAGGAAGGGGTGGAGATGGAAA
GGGTCAGCAGCGAAGGGGGAGTCGAGGGCGAAGAATGGGCAGGAGGAGGAGGACGGCGGTGGGAAGGGGAAGAAGGGGTCGTCGAGGAGGTGGGCGTAGC
GGTGGTGAGAACTCATGGTGGCCGGCGGCGGTGGAGCTCTCTGCTCAGCTGCCGCTGGAGTGGGAGTGTGACGGAG