Detailed information on CNT30596455


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554200Oryza meridionalisOryza glaberrima39.727.3191.26183forward
CNT30370422Oryza meridionalisOryza glumipatula39.727.990.71183forward
CNT30102268Oryza meridionalisOryza rufipogon35.7930.1198.79165forward
CNT30576740Oryza meridionalisOryza barthii40.7827.8192.02188forward
CNT30116911Oryza meridionalisOryza nivara22.7830.1790.48105forward

Expression of CNT30596455

Peptides detected in this lncRNA

>peptide 1 (84 aa)
NGDASSGVVILRGDLLDLDGEGAFLLLLVDHHGVVVLLLFLLVVLGLGFELAVILQGLVMELVLDLVVVVVVGGREVLLPGVGV*

>peptide 2 (52 aa)
MATHPAVLSSSGGISSILTEKGHFFCSLLTTTVLLSFFFFFLSSLALVLSLL*

Sequence

>CNT30596455
AATGGCGACGCATCCAGCGGTGTTGTCATCCTCAGGGGGGATCTCCTCGATCTTGACGGAGAAGGGGCATTTCTTCTGCTCCTTGTTGACCACCACGGTG
TTGTTGTCCTTCTTCTTTTTCTTCTTGTCGTCCTTGGCCTTGGTTTTGAGCTTGCTGTGATCCTGCAGGGCCTTGTGATGGAGTTGGTCCTCGATCTCGT
CGTCGTCGTCGTCGTCGGTGGCAGAGAAGTCCTCCTCCCAGGTGTAGGAGTGTGACCATGGCTCGAGGCAGCCCTTGCCCTTGAGCTCGGCCTCCCACTT
GAGCACCCTCTCGCCGCGCGGCTTGTCCTCGGTGGTCCACTTGACCTTGCGGCCGGCGGACTCGGTGACATAGGTGCACTTCCTGCGGGTGGGCTGTGGG
GCGCGGGCAGCGAGGGCGAGCTCGAGCTGGGAGACGCGGTCGGTGAGGGTGTGGAGGAGGA