Detailed information on CNT30116911


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554200Oryza nivaraOryza glaberrima44.5423.13100155forward
CNT30596455Oryza nivaraOryza meridionalis30.1722.7890.48105forward
CNT30370422Oryza nivaraOryza glumipatula44.5423.63100155forward
CNT30102268Oryza nivaraOryza rufipogon31.6120.0799.09110forward
CNT30576740Oryza nivaraOryza barthii31.0315.9899.07108forward

Expression of CNT30116911

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGRRRRTAVGRGRRGRRGGGRSGGENSWWPAAVELSAQLPLEWECEGDLVIY*

>peptide 2 (99 aa)
GGLGDIGALPAGGPGVWGAGGEGELELGDAVGEGVEMERVSSEGGVEGEEWAGGGGRRWEGEEGVVEEEGVAVVRTHGGRRRWSSLLSCRWSGSVKETW*

Sequence

>CNT30116911
GGTGGACTCGGTGACATAGGTGCACTTCCTGCTGGTGGGCCTGGGGTGTGGGGCGCGGGCGGCGAGGGCGAGCTCGAGTTGGGAGACGCGGTCGGTGAGG
GGGTGGAGATGGAAAGGGTCAGCAGCGAAGGGGGAGTCGAGGGCGAAGAATGGGCAGGAGGAGGAGGACGGCGGTGGGAAGGGGAAGAAGGGGTCGTCGA
GGAGGAGGGCGTAGCGGTGGTGAGAACTCATGGTGGCCGGCGGCGGTGGAGCTCTCTGCTCAGCTGCCGCTGGAGTGGGAGTGTGAAGGAGACTTGGTGA
TCTACTGATCTGATCTGATCGGATCTGGTCATCCATGGGGTGGGGAAA