Detailed information on CNT30370422


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554200Oryza glumipatulaOryza glaberrima70.7369.2599.57464forward
CNT30596455Oryza glumipatulaOryza meridionalis27.939.790.71183forward
CNT30102268Oryza glumipatulaOryza rufipogon46.0455.1199.01302forward
CNT30576740Oryza glumipatulaOryza barthii64.3362.4399.29422forward
CNT30116911Oryza glumipatulaOryza nivara22.8743.1100150forward

Expression of CNT30370422

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MERVSSEGGVEGEEWAGGGSGGWGEEGAGGGGRRWEGEEGVVEEVGVAVVRTHGGRRRWSSLLSCRWSGSVKESW*

>peptide 2 (35 aa)
ELAVILQGLVMELVLDLVVVVVVGGREVLLPGVGV*

>peptide 3 (63 aa)
MGRWRKRRVGRGRGRRRRTAVGRGRRGRRGGGRSGGENSWWPAAVELSAQLPLEWECEGELVIY

Sequence

>CNT30370422
TTGAGCTTGCTGTGATCCTGCAGGGCCTTGTGATGGAGTTGGTCCTCGATCTCGTCGTCGTCGTCGTCGTCGGTGGCAGAGAAGTCCTCCTCCCAGGTGT
AGGAGTGTGACCATGGCTCGAGGCAACCCTTGCCCTTGAGGTGGGTGGCCCACTTGAGCTTGGTGGCAGCAGCGGAGGCGGTCTTGGCCTTGGCCTCCCA
CTTCCACTTGCGGTCGAATCCATCGTCGTAGGGGGAGTCGAGCTCAGCCTCCCATTTGAGCACCCTCTCGCCGGCGCGAGGCTTGTCCTCGGTGGTCCAC
TTGACCTTGCGGCCGGTGGACTCGGTGACATAGGTGCACTTCCTGCTGGTGGGCCTGGGGTGTGGGGCGCGGGCGGCGAGGGCGAGCTCGAGTTGGGAGA
CGCGGTCGGTGAGGGGGTGGAGATGGAAAGGGTCAGCAGCGAAGGGGGAGTCGAGGGCGAAGAATGGGCAGGTGGAGGAAGCGGCGGGTGGGGAGAGGAA
GGGGCAGGAGGAGGAGGACGGCGGTGGGAAGGGGAAGAAGGGGTCGTCGAGGAGGTGGGCGTAGCGGTGGTGAGAACTCATGGTGGCCGGCGGCGGTGGA
GCTCTCTGCTCAGCTGCCGCTGGAGTGGGAGTGTGAAGGAGAGTTGGTGATCTACT