Detailed information on CNT30554191


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001564, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691369Oryza glaberrimaOryza sativa15.7958.5587.64267reverse complement
CNT30596483Oryza glaberrimaOryza meridionalis26.2660.3390.32444forward
CNT30109567Oryza glaberrimaOryza longistaminata21.0589.989.33356forward
CNT30102160Oryza glaberrimaOryza rufipogon26.7923.298.45453forward
CNT30574595Oryza glaberrimaOryza barthii9.9972.2285.21169forward

Expression of CNT30554191

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDPASYPYQFWSICNLHFTTESFSVHDAAPPL*

>peptide 2 (37 aa)
MMRTSTPTIHPRLHKYNFMVLLPALVHVNSTIRCVHS*

>peptide 3 (39 aa)
MAMTDCRKELGNQGWSLETPGGHRKGVLATLSVPKKLHF*

>peptide 4 (49 aa)
MDDCGGENRRSIGSRIPSLAEATLVFHFRGDSHNKGKSSDPATTAIHII*

>peptide 5 (50 aa)
MASFFSSPTSTRLLSSPPLPSIVLLPLPCWDGRLWRRKPAKYRQPHTLAC*

>peptide 6 (52 aa)
MGIMFIYMIALCHDDDSRVVFGSISEVLRLLNIIIWGSMLRDSRGGPLMVTA*

>peptide 7 (63 aa)
MLRHLFRPNGPCIKLGLLGTHSRVRERPQHPCGRPLPLLIAFSAAKNNRVLFRSKYSVATLPS*

>peptide 8 (81 aa)
MDSDCSTAPTSDSRHDSMRTLIWACKYFMESLSSLHSNGSSLISISVLEYLQSSFYYRVLFCARCCATSLGPMGRVSSWVY*

Sequence

>CNT30554191
CTCAAGTTTACTATAGTCTCTAGAGTATAGTGGAATAGAAATAGAATCGAGTCTTCAGTCCTTAGAGTCTTCGGAAGAGTTCGAGTATAGCTCTAGTAGC
TTTTCCTTCTTTTGTAAGACTTGTAATATTTATAGAATATTCTTCTCAATATATTTACGGTACTTTACTTCATTCTGATCATTCGAGTACCAGCTTTTCG
ATATATTATTCGAGATATAATTATCTAGCTAGCTTACTCGGAGATGCAATGGTATGGGTATAATGTTCATTTATATGATTGCTCTATGTCATGATGATGA
TAGTAGAGTAGTATTTGGTAGCATAAGCGAGGTGCTTAGACTATTGAATATCATTATTTGGGGTTCTATGCTGCGGGATAGTAGAGGTGGGCCGCTGATG
GTAACAGCTTAGCATGGGTATTCCTCCACGTTAGTATATAGTCCTAAGTTACTTTCCTTGGGAGGATACTCCTCCGTATTTAGCCCCGGTTGGATGGCCA
TGACGGATTGTCGTAAGGAACTCGGCAACCAGGGATGGTCTCTCGAAACACCAGGAGGGCATCGTAAGGGGGTATTGGCTACTCTCTCTGTCCCAAAAAA
ATTGCATTTCTAGCTCCAAAGCCCTGTCCCACAAAAATTGTATTTCTAGCCATGTGGGGCCCATCAAATTGATTCATCTAGATATGTTTCCTTAAGTTCT
CTCAGCCCTCCATCCCACGATCTAATCAGTTGCCTATCTCTCCCCCATGGCGTCATTCTTCTCCTCTCCCACATCAACTCGTCTCCTTTCCTCCCCTCCC
CTCCCCTCCATTGTCCTCCTCCCCTTGCCCTGTTGGGATGGACGATTGTGGCGGCGAAAACCGGCGAAGTATCGGCAGCCGCATACCCTCGCTTGCTGAA
GCGACCCTCGTATTCCACTTCCGAGGTGATTCCCACAACAAGGGCAAATCATCGGATCCCGCAACAACGGCGATCCACATCATCTAATCGGATTCCGCAA
CAACGGCAACCCTCATCGCTAGCCTACGCTCACGGGATTCCTGGAAGTCCTTAAGCCCGCAGGATAAAGCCATTAATGATGAGGACATCAACACCAACGA
TACATCCACGCCTCCACAAATACAACTTCATGGTCCTATTACCCGCGCTCGTGCACGTCAACTCAACTATCAGGTGCGTTCATTCTTGAATTCATATGAT
TCTTATTTATACCCTGGAGACACGTGCACTCTTGTTTTACTCAGGAACAATGGAGAGGATCAAATGGGGAGAGGATTAGCGTGGGATGGATTCGGACTGC
AGCACAGCACCAACTTCTGACAGCCGCCATGACTCCATGCGAACTCTGATTTGGGCGTGCAAGTACTTCATGGAAAGCTTGTCAAGTCTACATTCAAATG
GATCCAGCCTCATATCCATATCAGTTCTGGAGTATCTGCAATCTTCATTTTACTACCGAGTCCTTTTCTGTGCACGATGCTGCGCCACCTCTTTAGGCCC
AATGGGCCGTGTATCAAGTTGGGTCTATTAGGGACGCATTCTAGGGTTAGAGAACGACCCCAGCACCCCTGTGGTCGTCCTCTTCCTCTTCTTATAGCTT
TCTCCGCCGCCAAGAATAATCGGGTTTTGTTTAGATCAAAGTATAGCGTCGCTACTTTGCCGAGTTGATCCCGTGATCGATTGGATCGCCG