Detailed information on CNT30102160


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005245, E-value = 3e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554191Oryza rufipogonOryza glaberrima23.226.7998.45453forward
CNT30596483Oryza rufipogonOryza meridionalis23.3561.9690.13456forward
CNT30574595Oryza rufipogonOryza barthii8.6572.2284.62169forward

Expression of CNT30102160

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAMTDCRKELGNQGWSLETPGGHRKGVLATPSVPKKLHF*

>peptide 2 (29 aa)
MQHLINFVESSLHLIVSSTLQGIIYLQIP*

>peptide 3 (34 aa)
VVFGSISEVLRLLNIIIWGSMLRDSRGGPLMVTA*

>peptide 4 (81 aa)
MDSDCSTAPTSDSRHDSMRTMIWACKYFMESLSSLHSNGSSLMSISVLEYLQSSFYYRVLFCARCCATSLGPMGRVSSWVY*

>peptide 5 (64 aa)
MDNCGGENWRSIGSRIPSLAEATLLFHFRGRIPVYGSFLSKNQLNKKWAHQSSIAETIVAKPIK*

>peptide 6 (40 aa)
MPARLWSQAFHQSHLTIISAGDSRNNGKSSDPAITAIHII*

>peptide 7 (47 aa)
MTPAPLWSSSSSSYSFLRRQEIGFCLDQSIASLLCRVDPVIDWIAGLL

>peptide 8 (48 aa)
MDPASCPYQFWSICNLRFTTESFSVHDAAPPLWAQWAVYQVGSIRDAS*

>peptide 9 (50 aa)
MASFFSSPTSTRLLSSPPLPSIVLLPLPCWDGQLWRRKLAKYRQPHTLAC*

>peptide 10 (57 aa)
MMRTSTPTIHPRLHKYNFMVLLPALVHVNSTIRNNGEDQMGRRLAWDGFGLQHSTNF*

Sequence

>CNT30102160
GTAGTATTTGGTAGCATAAGTGAGGTGCTTAGACTATTGAATATCATTATTTGGGGTTCTATGCTGCGGGATAGTAGAGGTGGGCCGCTGATGGTAACAG
CTTAGCATGGGTATTCCTCCACGTTAGTACATAGTCCTAAGTTACTTTCCTTGGGAGGATACTCCTCCGTATTTAGCCCCGGTTGGATGGCCATGACGGA
TTGTCGTAAGGAACTCGGCAACCAGGGATGGTCTCTCGAAACACCAGGAGGGCATCGTAAGGGGGTATTGGCTACTCCCTCTGTCCCAAAAAAATTGCAT
TTCTAGCTCCAAGGCCCTGTCCCACAAAAATTGTATTTCTAGCCATGTGGGACCCATCAAATTGATTCATCTAGATACGTTTCCTTAAGTTCTCTCAGCC
CTCCATCCCACGATCTAATCAGTTGCCTATCTCTCCCCCATGGCGTCGTTCTTCTCCTCTCCCACATCAACTCGTCTCCTTTCCTCCCCTCCCCTCCCCT
CCATTGTCCTCCTCCCCTTGCCCTGCTGGGATGGACAATTGTGGCGGCGAAAACTGGCGAAGTATCGGCAGCCGCATACCCTCGCTTGCTGAAGCGACCC
TCTTATTCCACTTCCGAGGTAGAATACCGGTCTACGGCTCATTCCTTAGTAAAAACCAACTTAACAAGAAATGGGCACACCAGAGTAGCATAGCAGAAAC
AATTGTAGCGAAACCCATTAAATAAAAACCATAAGAAATTTGTTTTTACCAAAATAATAACACTAACAGTACCTTGCTCTTCTAGATCTTCATCACCTTC
AACATTAAGTTGATGTAGAGATATGCAACACTTGATCAATTTTGTAGAATCTTCTCTTCACCTAATTGTTAGCTCAACACTACAAGGAATAATATATCTC
CAAATCCCATAATCCAACAAGGAATTTTATGCATGTTCATAAAATAGTGTAGTAAAAGTTCATATTAAGTAATTTAAAAAAAATCTACTGCATATAAGGC
ACCACAGGTATTAGAACCTCCGATAGGTTCCTTTCCTGTCGCGTTCGCAGTTTCTACCCGAAACAGAGAGTGACATATCACTATTCATACACTCTGCAGA
CGTGTGTTGTTGTACCCATAGACGCCTTAAACCTTTTTAACACCCGCGTTACACCGCCACTACGCCAGCGCCTAAGCACACTTTATGGTGTATGCCGGCA
AGGCTATGGTCACAAGCTTTTCATCAATCCCATCTGACAATTATCTCTGCGGGTGATTCCCGCAACAACGGCAAATCATCGGATCCCGCAATAACGGCGA
TCCACATCATCTAATCGGATTCCGCAACAACGGCAACCCTCATCGCTAGCCTACGCTCACGGGATTCCTGGAAGTCCTTAAGCCCGCAGGATAAAGCCAT
TAATGATGAGGACATCAACACCAACGATACATCCACGCCTCCACAAATACAACTTCATGGTCCTATTACCCGCGCTCGTGCACGTCAACTCAACTATCAG
GAACAATGGAGAGGATCAAATGGGGAGACGATTAGCGTGGGATGGATTCGGACTGCAGCACAGCACCAACTTCTGACAGCCGCCACGACTCCATGCGAAC
TATGATTTGGGCGTGCAAGTACTTCATGGAAAGCTTGTCAAGTCTACATTCAAATGGATCCAGCCTCATGTCCATATCAGTTCTGGAGTATCTGCAATCT
TCGTTTTACTACCGAGTCCTTTTCTGTGCACGATGCTGCGCCACCTCTTTGGGCCCAATGGGCCGTGTATCAAGTTGGGTCTATTAGGGACGCGTCCTAG
GGATAGAGAATGACCCCAGCACCCCTGTGGTCATCCTCTTCCTCTTCTTATAGCTTTCTCCGCCGCCAAGAAATCGGGTTTTGTTTAGATCAAAGTATAG
CGTCGCTACTTTGCCGAGTTGATCCCGTGATCGATTGGATCGCCGGATTGCTT