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Detailed information on CNT30109567


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004400, E-value = 1e-179

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691369Oryza longistaminataOryza sativa58.5950.8893.53232reverse complement
CNT30554191Oryza longistaminataOryza glaberrima89.921.0589.33356forward
CNT30457129Oryza longistaminataSaccharum spontaneum29.0411.0883.48115reverse complement
CNT30344742Oryza longistaminataEragrostis tef42.1715.4182.04167forward
CNT30596483Oryza longistaminataOryza meridionalis54.5529.3588.89216forward
CNT30104201Oryza longistaminataOryza rufipogon67.9317.3797.77269reverse complement
CNT30576920Oryza longistaminataOryza barthii35.13.2781.29139forward

Expression of CNT30109567

Peptides detected in this lncRNA

>peptide 1 (80 aa)
DEDINTIDTSTSPQVQHHGPITRARARQLNYEVSSFLSSYSSSLYPGDACTRVLLRNDGEDPKGRGFARGGFGLQGSANF*

>peptide 2 (73 aa)
MERIQRGEDSRGVDSDCRAAPTSDGRHDFMRTPIWACKYFMESLSSLLSNGSSHMSISVLERPQLSFYSRLFSV

Sequence

>CNT30109567
TGATGAGGACATCAACACCATCGATACATCCACGTCCCCCCAAGTACAGCATCATGGTCCTATTACCCGCGCTCGTGCACGTCAACTAAATTATGAGGTG
AGTTCTTTCTTGAGTTCATATTCCTCTTCTTTATACCCCGGAGACGCGTGCACTCGTGTTTTACTCAGGAACGATGGAGAGGATCCAAAGGGGAGAGGAT
TCGCGCGGGGTGGATTCGGACTGCAGGGCAGCGCCAACTTCTGACGGCCGCCACGACTTCATGCGAACTCCGATTTGGGCGTGCAAGTACTTCATGGAAA
GCTTATCAAGTCTACTTTCAAATGGATCCAGCCACATGTCCATATCTGTTCTGGAGCGGCCGCAATTGTCATTTTACTCCCGACTGTTTTCTGTCC