Detailed information on CNT30596483


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691369Oryza meridionalisOryza sativa28.846.4986.32212reverse complement
CNT30554191Oryza meridionalisOryza glaberrima60.3326.2690.32444forward
CNT30109567Oryza meridionalisOryza longistaminata29.3554.5588.89216forward
CNT30102160Oryza meridionalisOryza rufipogon61.9623.3590.13456forward

Expression of CNT30596483

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MASKTMVVLFVVAASLLLLSQDVAFAARELADASGTMERIKQGESAQDGFGLQHITNF*

>peptide 2 (72 aa)
NAKRQRSRSTNKLSIAFSSLSKAHYTTSFITAKAKATYGGGHGVQDHGGAVRRGGVPPPALAGRGVCRQRAR*

>peptide 3 (74 aa)
MAATTSCELRFGCASTSWKACQVYFQMDPASCPYQFWSGRNLRFTTESFSVNSVVSPLWAQWAVYQVGSIRDVS*

>peptide 4 (81 aa)
MDSDCNTSPTSNGRHDFMRTPIWVCKYFMESLSSLLSNGSSLMSISVLERPQSSFYYRVLFCQQCCVTSLGPMGRVSSWVH*

Sequence

>CNT30596483
CAAACGCAAAACGCCAGCGCAGTCGCAGTACAAATAAGCTATCTATAGCCTTCTCCTCTCTTAGCAAAGCACACTACACTACTAGCTTCATCACAGCTAA
AGCTAAGGCTACGTACGGCGGTGGTCATGGCGTCCAAGACCATGGTGGTGCTGTTCGTCGTGGCGGCGTCCCTCCTCCTGCTCTCGCAGGACGTGGCGTT
TGCCGCCAGAGAGCTCGCTGACGCCAGTGGAACAATGGAGAGGATCAAACAGGGAGAATCCGCGCAGGATGGATTCGGACTGCAACACATCACCAACTTC
TAATGGCCGCCACGACTTCATGCGAACTCCGATTTGGGTGTGCAAGTACTTCATGGAAAGCTTGTCAAGTCTACTTTCAAATGGATCCAGCCTCATGTCC
ATATCAGTTCTGGAGCGGCCGCAATCTTCGTTTTACTACCGAGTCCTTTTCTGTCAACAGTGTTGTGTCACCTCTTTGGGCCCAATGGGCCGTGTATCAA
GTTGGGTCCATTAGGGACGTGTCCTAGGGTTAGAGAACGGCCCCAGCACCCCTGTGGTCGTCCTCTTCCTTTTTTTATAGCTTTCTCCGCCGCCAAGAAT
AATTGGGTTTTGTTTAGATCAAAGTATAGCGTCGCTACTTTCCCGAGTTGATCCCCTGATCGATTAGATCCCTGGATTGCTTGTTACTGAACCCCACTTG
TTACTTCTGTTGATTCAATTCAACATCTTTGATTCG