« Back to Musa acuminata search


Detailed information on CNT30586520


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553550Musa acuminataOryza glaberrima10.9733.4783.7580forward
CNT3010691Musa acuminataZea mays14.8141.0686.11108forward

Expression of CNT30586520

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MGVDVAEVVLEHLEPARLFRKRVAGRPVLGHPLQVEQTHLFLAPPGHLLAVALPAGHHVQVGDS*

>peptide 2 (43 aa)
MYKSGTAEAIAAAAKRRRKMIAEAMRRERRISSSRLTTPGLVI*

>peptide 3 (29 aa)
MRPSSCGTRRPGRLGTWPGTPRWSGRRTG*

Sequence

>CNT30586520
ACCCACAAACAACAAAGCAACAGGAAAAAAAGGGGGTTGCTAGTTTCAAATGACTAATCAATAGGTCACCCTGTAAGTATCGCAAGTTCCATCTCGGGCC
TTGTATGGGTAGTCCTCATCGGTGTCGATACCACCATTGTTGATGATGAACTCAAAGGCATAATCCATGAGCCCCCCGTTGCAGCCCTGGTTGTAGTAGG
TGTCGCAGTCCACCAATTCCTGCTCGGACAGAGAGATCAGGCAAATCATCGCCGTCCCTCAGCCGGTACCGGTTGCTGCCCTCCGATGAGGCCCTCCTCC
TGCGGGACGCGGCGGCCCGGACGCCTAGGTACTTGGCCCGGTACTCCTCGTTGGTCAGGTCGGCGAACCGGTTGAGGCCGAGGCGGAAGGCGTGCTCCCC
GCGGTCGGCCGCCGCGTTATGGGCGTCGATGTAGCGGAGGTTGTCCTTGAACACCTCGAACCGGCTCGCCTCTTCCGCAAGCGCGTTGCGGGACGGCCGG
TGCTTGGCCACCCACTCCAGGTAGAGCAGACGCACCTCTTCCTCGCTCCGCCCGGACACCTGCTCGCTGTGGCCCTCCCCGCTGGTCACCATGTACAAGT
CGGGGACAGCTGAGGCGATCGCCGCCGCGGCCAAGAGGAGAAGGAAGATGATAGCAGAAGCCATGAGGAGGGAGAGGAGGATATCTTCTTCAAGATTAAC
CACTCCAGGGCTTGTTATATAGAATGGAG