Detailed information on CNT30369249


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00008|PRMS_MAIZE, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30307702Oryza glumipatulaTriticum aestivum36.5612.3989.1683forward
CNT30552029Oryza glumipatulaOryza glaberrima48.919.0499.1111forward
CNT30141157Oryza glumipatulaLolium perenne26.876.3586.8961forward
CNT30685221Oryza glumipatulaTriticum urartu36.569.4487.9583forward
CNT30596584Oryza glumipatulaOryza meridionalis29.0711.590.9166forward

Expression of CNT30369249

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RGRPVGAGGAPEDVLTVRPARVLQPAVALPLPRVVLRRVLGIGAVKHCSGYHGEHEQAADC*

>peptide 2 (33 aa)
AAVQSAPAEPQKMFSPYGPPECCSRQSPFRCLA*

>peptide 3 (48 aa)
PRPSSRRRRSPRRCSHRTARPSAAAGSRPSAASRSPAASSGHRSSETL*

Sequence

>CNT30369249
CCGCGGCCGTCCAGTCGGCGCCGGCGGAGCCCCAGAAGATGTTCTCACCGTACGGCCCGCCCGAGTGCTGCAGCCGGCAGTCGCCCTTCCGCTGCCTCGC
GTAGTCCTGCGGCGAGTTCTGGGCATCGGAGCAGTGAAACATTGTAGCGGCTACCACGGCGAGCACGAACAAGCTGCAGATTGCTAGCTTGGATGCCTCC
ATCTCTGCTTGTAAACGTAGCTGCTTT