Detailed information on CNT30116996


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30398448Oryza nivaraTriticum turgidum21.9222.9686.373forward
CNT30242401Oryza nivaraAvena sativa37.5425.9390.4125forward
CNT30551343Oryza nivaraOryza brachyantha85.5945.3887.37285forward

Expression of CNT30116996

Peptides detected in this lncRNA

>peptide 1 (43 aa)
AENREYTAERNTCISARISMQSAPPRGPRGLDRDPTTVIGTAA*

>peptide 2 (38 aa)
QRIESIQQKGTHVYPHESRCNPHRHVGHADWTETLLLS*

>peptide 3 (47 aa)
RESRVYSRKEHMYIRTNLDAIRTATWATRIGPRPYYCHRHGRIGATQ*

Sequence

>CNT30116996
GCAGAGAATCGAGAGTATACAGCAGAAAGGAACACATGTATATCCGCACGAATCTCGATGCAATCCGCACCGCCACGTGGGCCACGCGGATTGGACCGAG
ACCCTACTACTGTCATAGGCACGGCCGCATAGGCGCCACCCAGTGATTGGGACGAATTCTAGTAGGTGTAGCCCTTGACGTACAAGCTCTCGGACGTGGC
GGCGTCGCCGGCGGCGCCGCCGTACTTGCCGAGCGTGGCCTCGGAGTTGGCCTTGCACCGGGCGAGGAAGGCAGCCTGCGCGGCGGCGACGTTCTGCGAC
GCCTCCTCCTCGCTCTGCCCGCCGGAGAGGAAC