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Detailed information on CNT30340303


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521812Eragrostis tefSetaria italica16.2126.4691.28172forward
CNT30361981Eragrostis tefSorghum bicolor9.4322.2790100forward

Expression of CNT30340303

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLTAPSAADSRSGRRSSISSDVASVKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXX

>peptide 2 (36 aa)
MVMELESERNDMVVAPLMIRLSPVPMAAACARSRSG*

>peptide 3 (33 aa)
MYNRKNTAACAVRGRQSCVKHSSSCDPNTWNIS*

>peptide 4 (30 aa)
MEISHTILVVGYVQSEKHSSLCSPRKAELR*

Sequence

>CNT30340303
GGCTGGGTTCGCATCTGAGTGAACAAGCAGTGCCAAAACATGAAAATATCTGTGGCGCTTAGCTACAATTAAACGATAAGAATGGCATCAAGATGGAGAT
CAGTCATACTATACTAGTAGTAGGTTATGTACAATCGGAAAAACACAGCAGCTTGTGCAGTCCGCGGAAGGCAGAGCTGCGTTAAACACAGTAGTAGCTG
CGACCCTAATACGTGGAATATCAGCTGATACTCTTTTAACCCGTGAAAAATGCTCAGCGTCCCAACATGTTGGTAAGGCCAACAGCGTGTGCGAGCGCAC
GCACGAGATAACACAACAAAAAATCAGTAGTGCCACTAGATAGGAAGGAGTATCTAACCAAAGCGGACAGGATCTAAAGACTCACCACACTGCACGGAAC
ACAAAATATATCATCGAAGCTCTACGGAACACAGCTTCGGCCACGCGCGGGACGATAAGTGTACGGCGGACACGTGCACGGTACTTTGGAACGGTCACTT
CTGTGCGCTCATCAGCTCAGTGGTGGTGGACTGCTTGCTGTTGCGCTCGTGCCTGGCGCCGGCGGCGAGGTCGTCGTCGTCCGCGTCCTTGCCGAAGAGC
TTGGCTGTGTCCTCGAGGCTCTTGCCCATGGTCTCCGGCAGGAAGAAGTACATGAACACCCACCCGGCCGCTGCGACGCACGCGTAGAGGTAGAAGCTCC
CGGCGATGGTGATGGAGTTGGAGAGCGAGAGGAACGACATGGTGGTGGCCCCGCTCATGATCCGGTTGAGCCCCGTGCCGATGGCCGCGGCCTGCGCGCG
CAGCCGCAGCGGGTAGATCTCGGAGCAGTAGACCCAGGCCACGGGTCCCAGCCCGGAGGCGAACGACGCGACGAACGACAGCATCGCGGCGATGCTGACG
GCGCCGAGCGCCGCGGACTCCCGCTCGGGGCGGCGGTCCAGCATCAGCAGCGACGTGGCGAGCGTGAAGAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGT