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Detailed information on CNT3050605


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FSY7|BIP_CORAV, E-value = 2e-71

BLAST vs NONCODE:
NONATHT003784, E-value = 7e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512873Cucumis sativusJuglans regia38.4927.4986.27204forward
CNT30727335Cucumis sativusCorchorus capsularis21.717.7287.83115forward
CNT30237452Cucumis sativusBrassica oleracea25.8521.7586.13137forward
CNT30239820Cucumis sativusAvena sativa24.155086.72128forward
CNT30613247Cucumis sativusArabis alpina24.3442.4386.05129forward
CNT30231843Cucumis sativusAnanas comosus8.8720.0991.4947forward
CNT30689574Cucumis sativusTriticum urartu24.3442.8686.82129forward
CNT30154231Cucumis sativusPrunus persica61.5197.0283.44326forward
CNT30569890Cucumis sativusVitis vinifera20.7518.1588.18110forward
CNT30726090Cucumis sativusLupinus angustifolius36.2327.1684.9192forward

Expression of CNT3050605

Peptides detected in this lncRNA

>peptide 1 (41 aa)
QPSYLKNYSEFLLPFPTTISLCPHHFLNQPCSLPKEINKNY*

Sequence

>CNT3050605
TCAACCATCCTATCTAAAGAATTACAGTGAGTTTCTTTTGCCATTCCCTACTACCATTTCTCTATGTCCTCATCATTTTCTCAACCAACCCTGCAGCCTT
CCGAAAGAGATCAATAAAAATTACTAAACACTCTGTTTAAAGCTCATCGTGAGACTCGTCGTCTTCTGCTGATTCACCGCCAGGAGCACCACCGGACCTT
TGGTAGACTGCGGTGATGATGGGGTTGCAGACGGCCTCCACCTCCTTGAGCTTCTCCTCATAGTCTTCCTTCTCGGCGCTCTGGTTGTCGTCGAGCCATT
CGAGAGCATCCTTGACGGCGGTGTAGGTTTCCAGGCTGTTACGCGCATCAATTCTCTCCTTTACCTTCTTGTCCTCCTCGGCGAACTCCTCGGCTTCACG
AACCATCCGGTCAATCTCCTCTTGGCTCAACCGACCCTTGTCGTTGGTGATGGTGATCTTCTCGGATTTACCAGTGCCCTTGTCTTCGGCTTTAACGTTC
AGGATACCATTGGCGTCAACCTCAAAGGTG