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Detailed information on CNT30237452


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512873Brassica oleraceaJuglans regia21.2718.0688.81134forward
CNT30239820Brassica oleraceaAvena sativa18.8946.4890.76119forward
CNT3082625Brassica oleraceaBrassica juncea33.4966.7792.89211forward
CNT30613247Brassica oleraceaArabis alpina24.7651.3292.31156forward
CNT30689574Brassica oleraceaTriticum urartu17.1435.8888.89108forward
CNT30154231Brassica oleraceaPrunus persica22.742.5687.41143forward
CNT30569910Brassica oleraceaVitis vinifera16.3525.1287.38103forward
CNT30726090Brassica oleraceaLupinus angustifolius21.7519.3883.21137forward
CNT3050605Brassica oleraceaCucumis sativus21.7525.8586.13137forward

Expression of CNT30237452

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MIGLHTASTSFNFSSYSSFSEFWFSSSHSKASLVAASIFSFSSASSLSASCSLRRFSPSPSCLPLQTPLPP*

>peptide 2 (47 aa)
MNIIKRAPPFLSIKKKKNQKKTKKKKTKALSFFFIPQNLHHEVSLTN*

>peptide 3 (78 aa)
GFYQTVSNVGFSSSEKEVHDKGLDEHNKESAPIPIHKKKKKPKKNQKKENKSVIILLYPSKSSPRGLSNKLRIRKGTT*

Sequence

>CNT30237452
GTGGTTTCTACCAAACAGTGTCTAATGTCGGCTTTTCAAGCTCTGAGAAAGAAGTACATGACAAGGGTTTAGATGAACATAATAAAGAGAGCGCCCCCAT
TCCTATCCATAAAAAAAAAAAAAAACCAAAAAAAAACCAAAAAAAAGAAAACAAAAGCGTTATCATTCTTCTTTATCCCTCAAAATCTTCACCACGAGGT
CTCTCTAACAAATTAAGAATAAGAAAAGGCACAACTTAGAGCTCATCGTGAGACTCATCCTCCTCCTCGGTCGCTGATTCTCCTCCCGCACCTGGTGCAC
CACCTGTCCTCTGATACACGGCTGTGATGATTGGGTTACACACAGCCTCTACTTCCTTCAACTTCTCGTCATACTCTTCCTTCTCTGAGTTTTGGTTCTC
GTCAAGCCACTCCAAGGCTTCTTTGGTCGCTGCTTCTATCTTCTCCTTCTCATCCGCCTCAAGTTTGTCTGCAAGCTGTTCCTTGCGTCGATTCTCTCCT
TCACCTTCTTGTCTTCCTCTGCAAACTCCTCTGCCTCCTTAACCATCCGGTCAATCTCTTCTTGGCTCAGTCGACCCTTCTCGTTTGTGATTGTGATCTT
CTCTGATTTACCACTCGCCTTGTCTTCTGC