Detailed information on CNT30569890


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03683|BIP3_TOBAC, E-value = 4e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512873Vitis viniferaJuglans regia39.632.3589.58240forward
CNT3086307Vitis viniferaVigna radiata16.0121.3788.6697reverse complement
CNT30243992Vitis viniferaAvena sativa25.5823.9283.87155forward
CNT3082625Vitis viniferaBrassica juncea39.7776.2780.08241forward
CNT30154147Vitis viniferaPrunus persica15.8421.1594.7996forward
CNT3021894Vitis viniferaPopulus trichocarpa17.333086.67105forward
CNT3050605Vitis viniferaCucumis sativus18.1520.7588.18110forward

Expression of CNT30569890

Peptides detected in this lncRNA

>peptide 1 (51 aa)
EVSSPQTKRRRKEKGREILFPLLPPLEILHSSFLPKPISRISPPDLSPEIT*

>peptide 2 (42 aa)
MVIFSDLPVPLSSALTFRIPFASTSNVTSICGVPLFNIGIRLS

>peptide 3 (29 aa)
MLKVHHGNHRLLLHLTQHLGLRLISGKQL*

Sequence

>CNT30569890
TTGAAGTATCTTCACCTCAGACAAAAAGGAGGAGAAAAGAAAAAGGAAGGGAAATTCTTTTCCCTTTACTTCCACCGCTAGAAATATTACATTCTTCATT
TTTGCCTAAACCTATCAGCCGCATTTCTCCGCCCGATCTCTCTCCGGAGATTACCTGAACTTCAGAGAATGCTCAAAGTTCATCATGGGAATCATCGTCT
TCTCCTCCATCTGACCCAGCACCTGGGGCTCCGCCTGATCTCTGGTAAACAGCTGTGATGATTGGGTTGCAGACAGCTTCCACCTCCTTAAGCTTCTCAT
CGTAGTCCTCTTTCTCGGCGCTCTGGTTGTCGTCGAGCCACTCAAGGGCCTCCTTCACGGCGGTTTCAATCTTCTCCTTCTCATCAGACTCGAGCTTGTC
AGCAAGCTTGTCCTTGTCATTGATCTGGTTCTTCATGTTGTAAACATAGGTCTCCAGGCGGCCCTTGTCATTTGTGATGGTGATCTTCTCTGATTTACCC
GTGCCCTTGTCCTCAGCCTTGACATTTAGGATACCATTTGCGTCAACTTCAAACGTGACTTCAATTTGTGGGGTTCCCCTGTTCAACATAGGAATCAGAT
TATCAC