Detailed information on CNT30501577


BLAST search results

BLAST vs Swiss-Prot:
sp|P26574|RBS2_SOLTU, E-value = 2e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616445Coffea canephoraSesamum indicum12.8622.2888.184forward
CNT30525466Coffea canephoraPhaseolus vulgaris16.5436.3685.19108forward
CNT30605276Coffea canephoraGossypium raimondii26.1943.2982.46171forward
CNT30623489Coffea canephoraDaucus carota26.4926.0980.92173forward
CNT30335392Coffea canephoraCynara cardunculus31.725.482.13207forward

Expression of CNT30501577

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MIIKQDRTGHYFLALSIFFSSQCERKKKKKRMHSVADEYKAAFMIKVSYISLEIRKHTPKPNVKAEKKERRRIEAKPDPPRERQIKKKNT*

>peptide 2 (34 aa)
MKLIHCTWRTLSNPMILTQQFGYSFRHSRTSFST*

Sequence

>CNT30501577
ATAAACGTCTAGATAGGTGATAAATAAATAGATGAAATTTGGATGATAATTAAACAGGACAGGACAGGACATTATTTCCTTGCACTCTCTATTTTCTTTT
CTAGCCAATGCGAAAGGAAAAAAAAAAAAAAAAGAATGCATAGCGTAGCAGATGAATATAAAGCGGCTTTCATGATTAAAGTCTCGTACATATCTTTGGA
AATCCGGAAACATACACCGAAACCGAATGTCAAAGCGGAAAAAAAAGAAAGGAGAAGAATAGAAGCAAAACCAGACCCACCACGGGAAAGGCAAATAAAA
AAGAAAAACACCTGAAAGTACAGCCCCAGTTCTCAATTTTATTGACAACTAGCTGTCAACTGCCAAGAAACGTAGCCTCAAATTTGAGGGGAAGAGGACG
GGGCCGGGGCCGAATTTGTGAAGAAGGGGCTTAAAAACCCTTTGGCTTGGCGGCAATGAAACTGATACACTGCACCTGGCGGACGTTGTCGAATCCGATG
ATCCTGACCCAGCAATTTGGGTATTCCTTCAGGCATTCCCGAACCTCCTTCAGCACCTGAGTTGCGTCCGTGCAGCCGAACATAGGCAGCTTCCACATGG
TCCAGTAGCGTCCGTCATAGTATCCCGGTGACCTGTGGTATTCACGGTACACA