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Detailed information on CNT30335392


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40250|RBS_LACSA, E-value = 4e-87

BLAST vs NONCODE:
NONCQUT001608, E-value = 1e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535503Cynara cardunculusEucalyptus grandis27.3625.8482.06223forward
CNT30317063Cynara cardunculusCorylus avellana17.324.3983.69141forward
CNT30514517Cynara cardunculusJuglans regia25.0334.8181.37204forward
CNT30372132Cynara cardunculusArabidopsis thaliana21.3526.9385.63174forward
CNT30501577Cynara cardunculusCoffea canephora25.431.782.13207forward
CNT30279728Cynara cardunculusChenopodium quinoa24.2926.7282.83198forward
CNT3069740Cynara cardunculusQuercus suber24.1721.7483.76197forward
CNT30525413Cynara cardunculusPhaseolus vulgaris28.9630.3782.63236forward
CNT30629679Cynara cardunculusVigna unguiculata24.2936.282.83198forward
CNT30710937Cynara cardunculusGlycine max24.4220.4983.92199forward
CNT30166270Cynara cardunculusPistacia vera26.1332.7282.16213forward
CNT30633374Cynara cardunculusCapsicum annuum23.822.6181.96194forward
CNT3091744Cynara cardunculusSolanum tuberosum24.1719.283.25197forward
CNT3083811Cynara cardunculusVigna radiata26.8716.7980.37219forward
CNT30235713Cynara cardunculusBrassica oleracea15.2124.2283.87124forward
CNT30508846Cynara cardunculusSolanum lycopersicum22.3338.2482.42182forward
CNT30146094Cynara cardunculusMedicago truncatula13.1321.0289.72107forward
CNT30313480Cynara cardunculusCamelina sativa21.3528.5784.48174forward
CNT3061903Cynara cardunculusArabidopsis lyrata21.9618.884.36179forward
CNT3074948Cynara cardunculusBrassica juncea19.3922.7382.28158forward
CNT30261239Cynara cardunculusBrassica rapa19.392081.65158forward
CNT30613234Cynara cardunculusArabis alpina19.3927.7283.54158forward
CNT30605276Cynara cardunculusGossypium raimondii20.9843.2985.38171forward
CNT30649450Cynara cardunculusRosa chinensis24.6633.9585.57201forward
CNT30623675Cynara cardunculusDaucus carota26.0111.7383.49212forward
CNT30479552Cynara cardunculusArabidopsis halleri21.3530.3184.48174forward
CNT30620550Cynara cardunculusCajanus cajan24.0516.3684.69196forward
CNT30355778Cynara cardunculusLactuca sativa26.0126.9790.09212forward
CNT30705707Cynara cardunculusPrunus avium23.5617.0482.81192forward
CNT3038822Cynara cardunculusCucumis melo12.5222.9287.25102forward
CNT30176139Cynara cardunculusVigna angularis24.0514.5881.63196forward
CNT30725197Cynara cardunculusLupinus angustifolius23.9327.6281.03195forward
CNT30115242Cynara cardunculusEutrema salsugineum15.8325.7582.95129forward

Expression of CNT30335392

Peptides detected in this lncRNA

>peptide 1 (62 aa)
NPKHSNKPESSLEKRVDRKLWSRGCLVAWWLSGNETHTLHLTNVVESDNTDEGIWVLLLALF*

>peptide 2 (39 aa)
MHCTLPPLLGREEKSLLAFLVAGKATLDLRPVKGATRLA*

>peptide 3 (68 aa)
MYLHALYSSAVAWEGRKVIVSLLGGGESDVRLETGERSDEASLSRGGAVDGGDGRGGDGGHFVGKAMSD

>peptide 4 (32 aa)
MKLRTMVVGMRGSRTSSIPMVATPVIQTNLIN*

Sequence

>CNT30335392
AAAACCCTAAACATTCAAACAAACCCGAGTCATCGTTAGAGAAGAGGGTCGATCGAAAGCTTTGGAGTAGGGGTTGCTTAGTAGCCTGGTGGCTTAGCGG
CAATGAAACTCACACACTGCACTTGACGAACGTTGTCGAATCCGATAATACGGACGAAGGCATTTGGGTACTCCTTCTTGCACTCTTCTAGCTCCTTCAA
CACCTGAGCTGAATCGGTGCATCCGAACATAGGCAACTTCCACATTGTCCAGTACCTTCCATCATAGTATCCCGGAGAACTGTGGTGCTCACGGTAAACG
AAACCATGCTATACAATCACACAAATCCCACAATTATAATTCATATATTCATCGGAATTTAATCGAAATTAACTATGATTAGAAATYGACCTCCAATTCG
AATTCCAAACAGGGAACCCATTTGTTGCGGAGAAGGTAGTCGACTTCCTTAGCCAATGAAGCTTCGGACAATGGTGGTAGGTATGAGAGGGTCTCGTACT
TCTTCAATCCCAATGGTGGCCACACCTGTAATTCAAACAAATCTGATAAATTAAGCTAATTCTGATTGAACTGAAATTGTTTTGATTTCTAGGGTTCATC
GTATATATGTACCTTCATGCATTGTACTCTTCCGCCGTTGCTTGGGAGGGAAGAAAAGTCATTGTTAGCCTTCTTGGTGGCGGGGAAAGCGACGTTAGAC
TTGAGACCGGTGAAAGGAGCGACGAGGCTAGCTTGAGCAGAGGTGGTGCGGTTGACGGTGGCGACGGCAGAGGAGGAGATGGAGGCCATTTTGTGGGGAA
GGCGATGAGTGATTT