Detailed information on CNT30623489


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-42

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535503Daucus carotaEucalyptus grandis29.2622.4881.96194forward
CNT30514517Daucus carotaJuglans regia30.6234.6482.76203forward
CNT30501577Daucus carotaCoffea canephora26.0926.4980.92173forward
CNT30196843Daucus carotaPisum sativum30.1742.0281200forward
CNT30310235Daucus carotaCamelina sativa26.420.5481.71175forward
CNT3059910Daucus carotaArabidopsis lyrata26.733.7881.92177forward
CNT3075084Daucus carotaBrassica juncea26.420.1680.57175forward
CNT30613234Daucus carotaArabis alpina29.2634.0480.41194forward
CNT30573761Daucus carotaVitis vinifera14.9325.7884.8599forward
CNT30115242Daucus carotaEutrema salsugineum21.2728.1482.98141forward

Expression of CNT30623489

Peptides detected in this lncRNA

>peptide 1 (44 aa)
ADVHFYYREFAFTLLDVKGFVVIQENMYQGRYYGSNELFLYVII*

>peptide 2 (48 aa)
MMQVFRRCRENKQVDIYNHQQSLHIILYSSNFLVLEIQVRNLKLKGMK*

>peptide 3 (36 aa)
SRCPFLLQRICFHIVGRERFCSDTREHVPRQILRKQ*

Sequence

>CNT30623489
AGCAGATGTCCATTTCTATTACAGAGAATTTGCTTTCACATTGTTGGACGTGAAAGGTTTTGTAGTGATACAAGAGAACATGTACCAAGGCAGATATTAC
GGAAGCAATGAACTGTTTCTATATGTTATCATATAATTTGTTGGTGTAAAAAGACCGTAGTGGTTAATTACTGCATGGAGAATCGGAGATATATAAAAAA
TACATCACGACATGAAAGCATATGATGCAAGTATTTAGAAGGTGCAGGGAAAACAAACAAGTAGATATATATAATCACCAACAGTCGCTACATATAATCC
TCTATAGTTCAAATTTCCTTGTGTTGGAGATACAAGTGAGAAATTTAAAACTGAAAGGAATGAAATGAAATTGCAAGAAGTTTATATATGAGCCGAACAA
GATAGATAAATATATGAAATCAACAGACAGATTGATCAGCATTCTGGCTGGTGAGCAATGAAACTGATGCACTGGACTTGGCGAACGTTGTCGAATCCGA
TGATACGGACGTAGGCCTGGGGGTACTCCTTGACGCACTCATCAAGCTCCTTCAACACCTGCGATGAGTCGGTGCACCCGAACATGGGAAGCTTCCACAT
AACCCAGTATCGTCCGTCATAGTATCCGGGGGATTTGTTGTGCTCACGGTACACGAAACCGTG