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Detailed information on CNT3027366


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379209Populus trichocarpaManihot esculenta24.3424.2691.8974forward
CNT3048431Populus trichocarpaPrunus dulcis43.0934.1187.02131forward
CNT30479039Populus trichocarpaArabidopsis halleri29.2829.0891.0189forward

Expression of CNT3027366

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MWWDVDHAYKVGSSAAVIWPARSKPGVEPRHLSEDLGVSALRVEGIA*

>peptide 2 (39 aa)
MLIRSGPVRLLSGPPVPSQELNQGILVKTWVSQLLEWRA*

Sequence

>CNT3027366
GCTGAGCTCAGCAACGTGAGTTTGTAACCCGAGTGGGGGCTTTAATGTGGTGGGACGTTGACCATGCTTATAAGGTCGGGTCCAGTGCGGCTGTTATCTG
GCCCGCCCGTTCCAAGCCAGGAGTTGAACCAAGGCATCTTAGTGAAGACCTGGGTGTCTCAGCTCTTAGAGTGGAGGGCATAGCGTGAGGCTGGTCTCAC
AGAGCAGCGATCACCTCTCGCTCCTGGCAGTGGAAGGATAACGGGTCGGTGCCATCTGGATCCGCATGGCCTGATGGGCTGGTCCTAATTGAACCATCAC
TTTT