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Detailed information on CNT30624505


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96007|NU3M_ALLCE, E-value = 3e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401117Daucus carotaTriticum turgidum27.528.4488.79223forward
CNT30681383Daucus carotaTriticum urartu29.5927.1887.92240forward
CNT30480888Daucus carotaArabidopsis halleri29.2226.5491.56237forward

Expression of CNT30624505

Peptides detected in this lncRNA

>peptide 1 (47 aa)
TMTNQLIYCRHRCLLCISPIFLPYYSWLLPIRSTLFPFIERSNRQIQ*

>peptide 2 (59 aa)
MVTPDPKHPFSIHREIQSSNSIKGHHGPISKRINLVDGIAHGKEKVTSKSRIINKIETR*

Sequence

>CNT30624505
ACCATGACGAATCAATTAATTTATTGTAGGCATCGGTGTTTGCTTTGTATTTCCCCCATATTTCTGCCCTATTACTCATGGTTACTCCCGATCCGAAGCA
CCCTTTTTCCATTCATAGAGAGATCCAATCGTCAAATTCAATAAAAGGCCATCATGGACCAATATCCAAACGGATCAATCTTGTTGATGGTATTGCCCAT
GGAAAGGAAAAGGTTACTTCCAAATCAAGGATTATAAATAAAATTGAAACAAGATAAAATCGTATATCAAAACGACTTCTGGCATCACCGAAAGGATGGA
AACCACATTTGTAGGCTGATAGTTTGTATAGACACTCAAATTATTAACCTAAATATCATTTAATATGGATCAGTGAAAATAATATCAAACCTGACCAGCC
GGAGAAAAAAGAAACTTCACCCTATAAAGATGAAATCAGATGTAAAGGTATAAAACAAAGAATTCCTAGAGGATTCCGAGATCTTTACAGAATGGTAAGA
CGTCAAAAATGAAAAAGTAACACATTCATTACCAATTCAAATACGGACTATCAGAACAGAATCAACCGAATCAAGAATTTATTATAGTAATATTTGCATA
ATTCATACATCGAAAAAACAGAATTTGGCTATAATATGTGAACAAATAATACATATCTTGATCAAAGAGCTTTCTATAATGGTAATACACATAGGGATGA
CAAAATAATCCCATCTGGCGGATAACCAATCGCAAATCCAACATTTTTTATTTACCAAACCTGATTTTTTATATTTCGATTTGGATATAGTTTTTAAATA
AGAATTTTTTT