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Detailed information on CNT30681383


BLAST search results

BLAST vs Swiss-Prot:
sp|P27062|NU3M_PANGI, E-value = 6e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401117Triticum urartuTriticum turgidum70.2279.0899.19620forward
CNT3081668Triticum urartuBrassica juncea19.3730.7691.23171forward
CNT30624505Triticum urartuDaucus carota27.1829.5987.92240forward
CNT30480888Triticum urartuArabidopsis halleri72.2571.4488.87638forward

Expression of CNT30681383

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MWIRTTEGFQGQCPLLFPLKQEKKDLQSSKKTDALTRNGFRASCSIRCLFCSNQLSYQNHLPKVS

>peptide 2 (36 aa)
MTNQLIFCRHPSFLCPSPLCPFKSGYSLSEAPLFHS*

>peptide 3 (31 aa)
MSFPPLPFQKWLLPIRSTPFPFIERSSHQNQ*

>peptide 4 (34 aa)
MDQDPNRSILLGGTAQGKEKVTSGSGIINKIGTG*

>peptide 5 (30 aa)
MPLALPTETRKKGFAVQQENGCANAQRLSR*

Sequence

>CNT30681383
GTGGAATGTAAGCAAATATATCATGTCGATTGCTCAACCGTACTTTTGCTATCTTACGTAGAGCTGAATTAGGTTTTTTCGGTGTTCTCGTCGAAACACG
CAGGCATACTCCTTGCTTCTGGGGACATTGATCCGAAGCTCGAGTACGGTCCCTGCGCCGTTTTTCTTCTCTACCATGACGAATCAATTGATTTTTTGTA
GGCATCCCTCTTTCCTATGTCCTTCCCCCCTTTGCCCTTTCAAAAGTGGTTACTCCCTATCCGAAGCACCCCTTTTCCATTCATAGAGAGATCCAGTCAT
CAAAATCAATAAAAAGGCCATCATGGACCAAGATCCAAACAGATCAATCTTGTTAGGAGGTACTGCCCAAGGAAAAGAAAAGGTGACTTCCGGATCAGGG
ATAATAAATAAAATAGGAACCGGATAAAATCGTATATCGAAACGACTTCTGGCATCACCGGAGGGATCGGAACCACATTCGTAGGCCGACAATTTTTCTG
GATAGGTCGAACTATTGGAAGCAAATGGAAAAGGAACACCGAGTGGAATCAAAGAAACTAGCGGACTGATCACTAAATAGATACAAATAGGTGCAAATTC
CGACATCACCAAAGCCCACTTCGTTCTCTCGCTCTCCTCGCGGCGCTCCTTGCTCGCGGAGCGGCATACCGAAAAAAAGACGCTCAGATGTGGATTCGAA
CCACTGAAGGATTTCAAGGGCAATGCCCCTTGCTCTTCCCACTGAAACAAGAAAAAAAGGATTTGCAGTCCAGCAAGAAAACGGATGCGCTAACGCGCAA
CGGCTTTCGCGCTAGTTGCTCAATCCGTTGCTTGTTTTGCTCTAACCAGCTGAGCTACCAGAACCACTTGCCTAAAGTCTCTT