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Detailed information on CNT30401117


BLAST search results

BLAST vs Swiss-Prot:
sp|P27062|NU3M_PANGI, E-value = 4e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3081668Triticum turgidumBrassica juncea21.8130.7691.23171forward
CNT30624505Triticum turgidumDaucus carota28.4427.588.79223forward
CNT30681383Triticum turgidumTriticum urartu79.0870.2299.19620forward
CNT30480888Triticum turgidumArabidopsis halleri47.3241.5592.18371forward

Expression of CNT30401117

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPLALPTETRKKGFAVQQENGCANAQRLSR*

>peptide 2 (30 aa)
KHPFSIHREIQSSKSIKRPSWTKIQTDQSC*

>peptide 3 (69 aa)
MWIRTTEGFPGQCPLLFPLKQEKKDLQSSKKTDALTRNGFRASCSIRCLFCSNQLSYENHLPKVSFLHL*

>peptide 4 (34 aa)
MDQDPNRSILLGGTAQGKEKVTSGSGIINKIGTR*

>peptide 5 (31 aa)
MSILPAVEELAQEPRAGQGLDGPRSGRSSSL*

Sequence

>CNT30401117
AAGCACCCCTTTTCCATTCATAGAGAGATCCAATCGTCAAAATCAATAAAAAGGCCATCATGGACCAAGATCCAAACAGATCAATCTTGTTAGGAGGTAC
TGCCCAAGGAAAAGAAAAGGTGACTTCCGGATCAGGGATAATAAATAAAATAGGAACCAGATAAAATCGTATATCGAAACGACTTCTGGCATCACCGGAG
GGATCGGAACCACATTCGTAGGCCGACAATTTTTCTGGATAGGTCGAACTATTGGAAGCAAATGGAAAAGGAACACCGAGTGGAATCAAAGAAACTAGCG
GACTGATCACTAAATAGATACAAATAGGTGCAAATTCCGACATCACCAAAGCCCACTTCGTTCTCTCGCTCTCCTCGCGGCGCTCCTTGCTCGCGGAGCG
GCATACCGAAAAAAAGACGCTCAGATGTGGATTCGAACCACTGAAGGATTTCCAGGGCAATGCCCCTTGCTCTTCCCACTGAAACAAGAAAAAAAGGATT
TGCAGTCCAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTGCTCAATCCGTTGCTTGTTTTGCTCTAACCAGCTGAGCTACGAGAA
CCACTTGCCTAAAGTCTCTTTTCTTCATCTATGAGCATCCTACCTGCAGTGGAGGAGCTTGCTCAAGAACCGAGAGCCGGCCAGGGACTGGACGGCCCTC
GTTCGGGAAGGTCTTCTTCGCTATAGACGCCACCAAGAACAAGAAAGGGGCGCTCCGCTCCTAGTCACTAAGCAGCTATTCTGT