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Detailed information on CNT30202937


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM4|PIP27_MAIZE, E-value = 2e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30437070Helianthus annuusAegilops tauschii32.0426.7281.06132forward
CNT30681057Helianthus annuusTriticum urartu32.5213.1581.34134forward
CNT30477244Helianthus annuusArabidopsis halleri25.9718.1483.18107forward
CNT30354871Helianthus annuusLactuca sativa47.0959.3384.54194forward

Expression of CNT30202937

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TLAYILTKLKRKYNYNKRFFSKISTSQEPPWLDEHLSSLSIASE*

>peptide 2 (36 aa)
MVQFRISLAFIPDNGQNGDIEEKECGDKLGDQCTVE*

Sequence

>CNT30202937
ACACTTGCATACATATTAACGAAACTCAAAAGAAAATACAATTACAATAAACGATTTTTTTCAAAGATATCTACAAGCCAAGAACCACCATGGCTGGATG
AACATCTTTCAAGCTTAAGCATTGCTTCGGAATGAACCAAGTGCTTTGATCGCGGCGGCTCTAAGCACAAACTGGTGGTAGACTGCAGCGGCGAATGCTC
CGATGAATGGTCCAATTTAGGATCAGTCTGGCTTTTATACCCGATAACGGTCAAAACGGTGACATAGAGGAAAAGGAGTGTGGCGACAAACTCGGCGATC
AATGCACGGTAGAATGACCATTTGGTGAGCTCGTCCGCGTCAAAAAACGGAGCAGGCGGCGGGTCGTGGTAGTCCTTAGCGGCGTACTCGCTTCCGCCGC
CGTGGTGCTCCG