Detailed information on CNT30543361


BLAST search results

BLAST vs Swiss-Prot:
sp|P43287|PIP22_ARATH, E-value = 5e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547793Brassica napusIpomoea triloba30.121.2382.893forward
CNT30374824Brassica napusArabidopsis thaliana29.1319.3186.6790forward
CNT3044720Brassica napusPrunus dulcis33.0115.4883.33102forward
CNT3082727Brassica napusBrassica juncea29.1319.1185.5690forward
CNT30612661Brassica napusArabis alpina36.8939.4585.09114forward
CNT30477244Brassica napusArabidopsis halleri60.1931.5386.02186forward
CNT30113887Brassica napusFicus carica28.4810.9984.0988forward

Expression of CNT30543361

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTVKTVTYKKRRVATNSAMTALYKDHLVNSSASKNGVGGGSW*

>peptide 2 (35 aa)
PTGGCVGRNLVANDSQNGDVQEEKSGYKLGDDGSV*

>peptide 3 (29 aa)
MMFLNFLMNCCCCGCEKMSKRFSLYRVSY*

Sequence

>CNT30543361
CCCACCGGCGGCTGTGTCGGACGAAATCTTGTAGCCAATGACAGTCAAAACGGTGACGTACAAGAAGAGAAGAGTGGCTACAAACTCGGCGATGACGGCT
CTGTATAAGGACCATCTTGTCAACTCCTCCGCGTCGAAAAATGGTGTAGGCGGCGGGTCTTGGTAATCCCTCGCCGCAAATCCTTCTGCTCCTTCCACGT
CTTTCGCCATGTATGTATGATGTTTCTAAATTTTCTTATGAATTGTTGTTGTTGTGGTTGTGAGAAGATGAGTAAAAGGTTCTCTTTATATAGAGTGAGC
TATTGATTA