Detailed information on CNT3040156


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671824Marchantia polymorphaSetaria viridis48.3142.6690.45157forward
CNT30522066Marchantia polymorphaSetaria italica58.4623.5488.42190forward
CNT3041845Marchantia polymorphaChlamydomonas reinhardtii41.2342.0191.79134forward
CNT30596855Marchantia polymorphaOryza meridionalis51.3828.3189.82167forward
CNT30482942Marchantia polymorphaChara braunii37.2313.9291.74121forward
CNT30577711Marchantia polymorphaOryza barthii51.382089.82167forward

Expression of CNT3040156

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAWTKNPNMENMANRPFLISFTFSSAKVSGSSARPSGS

>peptide 2 (43 aa)
GRENHKISSDCPKIVQVQQVRSVCYRGSDQTEFIRQITPLLHT*

>peptide 3 (68 aa)
AERITRYQVIVQKLYKSNKFGRYVTGVQIRLSSFDRLLLSYTLKLRGRSWWRKPRRCWRPGSPGGPCR*

Sequence

>CNT3040156
GGCCGAGAGAATCACAAGATATCAAGTGATTGTCCAAAAATTGTACAAGTCCAACAAGTTCGGTCGGTATGTTACAGGGGTTCAGATCAGACTGAGTTCA
TTCGACAGATTACTCCTCTCCTACACACTTAAGCTCCGGGGACGAAGTTGGTGGCGTAAGCCCAGGCGTTGTTGGCGACCGGGTTCTCCAGGGGGCCCTT
GCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCCAACCGGCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAAGGTCTCGGGG
TCCTCAGCAAGACCCAGTGGGTCGA