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Detailed information on CNT30522066


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577711Setaria italicaOryza barthii22.822.0489.67184forward
CNT3040156Setaria italicaMarchantia polymorpha23.5458.4688.42190forward

Expression of CNT30522066

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

>peptide 2 (64 aa)
MLWGALLTVRRMVMRPPASAAAAGRETRAWPRKLVVWWSADAAIFCVSGEHDGAAAYWSVRLFSA

>peptide 3 (55 aa)
MSMHVPDALGSALDGAAHGDAAAGIGGGGGAGDQGLAEEAGGLVERRRGHLLRVR*

>peptide 4 (29 aa)
MMRRPWINHQETKATDDEHARTRCSGERS*

Sequence

>CNT30522066
TGACGGTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACG
TCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGA
GCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTTCTCGATGGGTCCCTTGCCGGTGACGATGGCC
TGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCGAGGCCCA
GCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGTCCCTCCCCGAGCGGGCCGCCGCCGACGCGGTACGACGGCGTCTGCTCCGAGAACGGGCCCAG
GTACTTGGGGCGGTCAGGGCCGTACCTGCACGTACGTAGCTGATGATGCGTCGTCCATGGATCAATCATCAAGAGACAAAAGCAACTGACGATGAGCATG
CACGTACCAGATGCTCTGGGGAGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGGCGGCGGCGGGGCGGGAGACCAGGGCCTGG
CCGAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGATTGTTTT
CGGCTGA