CANTATAdb - search

Detailed information on CNT30577711

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671824	Oryza barthii	Setaria viridis	19.64	44.57	94.51	164	forward
CNT30522066	Oryza barthii	Setaria italica	22.04	22.8	89.67	184	forward
CNT30554923	Oryza barthii	Oryza glaberrima	68.38	51.63	99.47	571	forward
CNT3040156	Oryza barthii	Marchantia polymorpha	20	51.38	89.82	167	forward

Expression of CNT30577711

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 2 (51 aa)
MAWTKKPNMENMARRXFLISFTLSSANASGSSARSSGKTQPSAPSMAHRQR*

>peptide 3 (62 aa)
IYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

Sequence

>CNT30577711
CAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATG
GTTATATTTTGGGATCGAGGGAGTATTTGTTTCTGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGT
TGGGAAACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCATCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACC
CATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGCCCCACTTCACTTGCCGGGG
ACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGA
ACATGGCGAGGCGGCCNTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCC
CAGCATGGCCCACCGGCAGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATG
GTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAG
TGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCG