CANTATAdb - search

Detailed information on CNT30482942

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 9e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30640611	Chara braunii	Nymphaea colorata	24.28	17.96	84.36	211	forward
CNT30125041	Chara braunii	Physcomitrium patens	21.98	33.63	86.39	191	forward
CNT3041845	Chara braunii	Chlamydomonas reinhardtii	18.64	50.78	88.89	162	forward
CNT30370794	Chara braunii	Oryza glumipatula	20.37	24.76	91.53	177	forward
CNT3040156	Chara braunii	Marchantia polymorpha	13.92	37.23	91.74	121	forward

Expression of CNT30482942

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ALLNFVCDTNVLAPPKKKVLHFTAVFFVVRAKIFVC*

>peptide 2 (38 aa)
MVDRDRGTLVNPGGSSQCHTIHFNATRNESFNLQTRKI*

>peptide 3 (43 aa)
MAWTKKPNMENMAKRPFLSSLTFSSAKVSGSSAKPKGSKLPPG*

>peptide 4 (63 aa)
MVVQVLQRALAGDDGLDEEAEHGEHGQAAILELLDLQLRQGIGVVGQAQGVEAAARVEGVHHLS

Sequence

>CNT30482942
GCCCTTTTGAACTTCGTTTGTGACACAAACGTACTTGCCCCCCCAAAAAAAAAGGTATTGCATTTCACTGCGGTCTTTTTCGTTGTGAGGGCCAAGATAT
TCGTTTGTTGAGAGTGTGGTTTTGCAGGATGGTAGATAGGGACCGTGGGACTCTCGTAAATCCAGGGGGAAGCTCTCAATGCCACACAATACACTTTAAT
GCAACCAGAAATGAAAGTTTCAACTTGCAGACAAGGAAGATTTGATCATAAAGGTATTGAATACAATTACTAGGGATCACTGATTCTGTGTTATGTACAG
AGGAGGTTGTCACTGACTCGATATACTGAGTGCAGCTCCAACGAAGAATTATCGGCTCTAATGGTTAGGCTGAGTGCTGATGGGCATGAAGACACCCTAA
GAGGCTACGACTGAAAGGCAGTGCTATCCAGCCAGACCCCCAGTGGTAAGAGCAGAGCAATTAGGAAACATCATGACGATTCCCGCCCCCCAGCCATAGC
ATCCTGTCTAGTTCTGGGCATGAGCTGCCCTCCAAGAAAAAGCTAAGTATTGCCTGGTGCTATCTGAGTATGATGTGAATAGTGGATCAGCCTGACCCTG
TATACTCTATACATCTAAGATCCAGGGACGAAGTTCTGGGCGTAGGCCCAGGCGTTGTTGGCGACGGGGTCAGCCAGATGGTCGTTCAGGTTCTCCAACG
GGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCCAAGCGGCCATTCTTGAGCTCCTTGACCTTCAGCTCCGCCAAGGT
ATCGGGGTCGTCGGCCAAGCCCAAGGGGTCGAAGCTGCCGCCCGGGTAGAGGGGGTCCACCACCTCTCC