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Detailed information on CNT30596855


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671824Oryza meridionalisSetaria viridis27.844.5795.73164forward
CNT3040156Oryza meridionalisMarchantia polymorpha28.3151.3889.82167forward

Expression of CNT30596855

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSTAPRGPSPGRRAPWWPRPLMH*

>peptide 2 (30 aa)
VFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

>peptide 3 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

Sequence

>CNT30596855
GTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAGAAT
AACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACACAAC
ACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCTCTC
ACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCC
GAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGACGGCGCCGCGCGGGCCATCACCGGGG
AGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCACTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGAGTGAGTTGGGAGTTGG