Detailed information on CNT30671824


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 7e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596855Setaria viridisOryza meridionalis44.5727.895.73164forward
CNT30577711Setaria viridisOryza barthii44.5719.6494.51164forward
CNT3040156Setaria viridisMarchantia polymorpha42.6648.3190.45157forward

Expression of CNT30671824

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MRQLACSINQSTYAPPGRKTMELQRRMASLVAGDEVGGVGPGVVVDWVGERALAGDDGLDEESEHGEHGEAAVLELLDLELGEGLRRVCWTSR*

>peptide 2 (40 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGECAGPVGSCC*

>peptide 3 (52 aa)
ILVYNADSSSRLAPEMQRETRHACGSSLAASTNPRTPLPAGRQWSCRGEWRA*

Sequence

>CNT30671824
CATCTTAGTGTACAACGCCGACTCATCATCTCGACTTGCCCCTGAAATGCAACGTGAAACAAGACACGCATGCGGCAGCTCGCTTGCAGCATCAACCAAT
CCACGTACGCCCCTCCCGGCCGGAAGACAATGGAGTTGCAGAGGCGAATGGCGAGCTTAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGT
TGTTGACTGGGTCGGCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTT
GACCTTGAGCTCGGCGAAGGCCTCAGGAGAGTGTGCTGGACCAGTCGGTAGCTGCTGCTGATGGGTGA