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Detailed information on CNT30400520


BLAST search results

BLAST vs Swiss-Prot:
sp|P00228|FER_WHEAT, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695212Triticum turgidumOryza sativa22.6623.8690.42167forward
CNT30193184Triticum turgidumSecale cereale36.530.8594.05269forward
CNT30307052Triticum turgidumTriticum aestivum43.6946.94100322forward
CNT30591745Triticum turgidumMusa acuminata14.1123.1686.54104forward
CNT30442558Triticum turgidumAegilops tauschii26.8737.6498.99198forward
CNT30141331Triticum turgidumLolium perenne29.4431.7789.86217forward
CNT30596773Triticum turgidumOryza meridionalis22.6625.3491.02167forward
CNT30357736Triticum turgidumLactuca sativa21.4427.1584.18158forward
CNT30370840Triticum turgidumOryza glumipatula22.6623.1990.42167forward
CNT30102906Triticum turgidumOryza rufipogon22.6621.4984.43167forward
CNT30117414Triticum turgidumOryza nivara22.6619.7290.42167forward

Expression of CNT30400520

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTRSEVGYAAQVSTHPASIWSSSRKLWSDWSSWPETTFPAQEEQEPARQE*

>peptide 2 (35 aa)
MEYNLISFYYLIDLRKLTLGINKQKQSKSDHNSKY*

Sequence

>CNT30400520
GCAAACTAAAAAGGATCTAAATCATAAGTGAATCGCGAGGCACGCGTAACGGAGACATGGAGTACAATCTCATCTCCTTTTATTACTTGATTGACTTGAG
AAAATTAACACTAGGCATTAATAAGCAAAAGCAATCAAAATCCGACCACAACAGCAAGTACTAATTACGTACTGTACTTTGCAACTCCTCAATATCCTGA
TACAGTTCGAATGTCGTGCATGGTACACGCGCACGGTGGAAACGGGTCGAACTAAACAAATCAGTGAATTCAAGCGGTGAGCTCCTCCTCCTTGTGGGTC
TCGATGACGAGGTCCGAGGTGGGGTACGCGGCGCAGGTGAGCACCCACCCCGCCTCGATCTGGTCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCCAGCT
GGCCGGAGACCACCTTCCCGGCGCAGGAGGAGCAGGAGCCGGCGCGGCAGGAGTAGGGCAGCTTATGCGGTGAGCTCCTCCTCCTTGTGGGTCTCGATGA
CGATGTCGGACTTGGGGTAGGCGTGGCAGGAGTAGGGCAGGTCGATCCCCTCCTCCTCGGCCTGGTCGAGGATGTAGACGTCATCGGGGACCTCCAGCTC
CACCTCGCCCTCGGGCGTCACCAGCTTCACCTTGTACGTCGCCTGGGCGCGGAGCCTGGCTCCCCGCACCTGCTTGGCGGCGGCGAGGCTGAGGGCCGCG
GGCGCGAGGGCCACGCGGGGCGCCGGTGGCGCCACGG