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Detailed information on CNT30591745


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675603Musa acuminataSetaria viridis22.9430.9384.47103forward
CNT30523411Musa acuminataSetaria italica22.9411.5284.47103forward
CNT30305000Musa acuminataTriticum aestivum23.1620.9786.54104forward
CNT30227182Musa acuminataHordeum vulgare23.1611.0285.58104forward
CNT30400520Musa acuminataTriticum turgidum23.1614.1186.54104forward
CNT30442558Musa acuminataAegilops tauschii23.1619.7786.54104forward
CNT30255373Musa acuminataAvena sativa23.1617.9986.54104forward
CNT30670303Musa acuminataTriticum dicoccoides23.1617.4586.54104forward
CNT30467544Musa acuminataSaccharum spontaneum23.1614.7383.65104forward
CNT30140637Musa acuminataLolium perenne23.1615.585.58104forward
CNT3010872Musa acuminataZea mays23.1612.7584.62104forward
CNT30683972Musa acuminataTriticum urartu23.1615.0986.54104forward
CNT30351013Musa acuminataEragrostis tef23.1616.6983.65104forward
CNT30357736Musa acuminataLactuca sativa25.6119.7684.35115forward
CNT30584932Musa acuminataEchinochloa crusgalli23.1619.7384.62104forward
CNT30497939Musa acuminataDigitaria exilis23.1613.2884.62104forward

Expression of CNT30591745

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MKVRATSISTTTTTVSASELLLFVGLDNDVRPGVGGTGEHVACLDLIVVEEAGVRL

>peptide 2 (53 aa)
AATSLETAAANEASSAAMEAFVSTDSIPHVKRERTNITAMTLAHNAKQQQKSV*

>peptide 3 (34 aa)
MQNNSKSRYDAASWAPPLATQNSRSRQGKIPTDS*

>peptide 4 (61 aa)
SHITRDRCCQRSLIGGHGSLCFDRLHSPRQTRENQYYCHDVSPQCKTTAKVGMMLPHGRHH*

Sequence

>CNT30591745
GCAGCCACATCACTAGAGACCGCTGCTGCCAACGAAGCCTCATCGGCGGCCATGGAAGCCTTTGTTTCGACAGACTCCATTCCCCACGTCAAACGAGAGA
GAACCAATATTACTGCCATGACGTTAGCCCACAATGCAAAACAACAGCAAAAGTCGGTATGATGCTGCCTCATGGGCGCCACCACTAGCAACACAAAACT
CAAGGTCTCGACAAGGAAAGATACCGACCGATAGCTAACCCACAAAGATAGAATGAGAAGGACGAGAAGAGCTAGCAAGCAATGAAGGTTCGTGCGACTT
CCATCTCCACCACCACGACCACCGTCTCAGCCAGTGAGCTCCTCCTCTTTGTGGGTCTCGATAATGACGTCAGACCTGGGGTAGGCGGCACAGGTGAGCA
CGTAGCCTGCCTCGATCTGATCGTCGTCGAGGAAGCTGGCGTCCGCCTG