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Detailed information on CNT30394664


BLAST search results

BLAST vs Swiss-Prot:
sp|P58420|NU4C_WHEAT, E-value = 3e-163

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196709Triticum turgidumPisum sativum69.1437.9683.58670forward
CNT30184264Triticum turgidumSecale cereale89.0650.4798.73863forward
CNT30221821Triticum turgidumHordeum vulgare99.1777.1397.4961forward
CNT30231113Triticum turgidumAnanas comosus60.3777.4889.06585forward
CNT3055427Triticum turgidumAmborella trichopoda42.2114.8284.35409forward

Expression of CNT30394664

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLPSLIIFPLKAYMYYNVLPHGYLVTTYVGV*

Sequence

>CNT30394664
AAAAAAATAAACCTATTTAGGATAATAATTGGATAAGAGAGCCTCTACCCTGTCAACGGATAGGGAGAGAACAAAATCTGGATAAATACCAATTCCTATT
ACTGGTAAAAAGATACAGATTAAAATAAAGAGTTCTCGTGGTCCAGAATCCACAAAATTTGCGTTTGGAACATTAAATAGCTTGTATCCATAGAACATCT
GGCGTAACATAGATAATAAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTAATTAGTGTTTTTGGCATTAACAGAAATTTTGGACTAGT
AATTAGTCCAAAAAATACTACTAATTCTGCGACAAAACCACTCATTCCTGGTAAGGCAAGAGAAGCCATTGAAAAGCTACTAAACATGGTAAAAATTTTA
GGCATTGGGATAGATATTCCCCCCAGTTCTTCGAGATAAACAAGACGCATTCTATCAGAAGCGGTTCCTGCCAAGAAAAAAAAGTGTAGCACCAATAAAT
CCATGGGATAATATTTGTAAAATAGCTCCATTGAGTCCAATGTTGGTTATGGAACCAATTCCTATAATTATGAAACCCATGTGAGATACAGAGGAATAAG
CTATTCTTTTTTTGAAATTTCGTTGACCAAGAGAAGTTGAAGCTGCATAGATTATTTGGATCGCTCCTATTATTACTAACCAGGGCGAAAATAGATAATG
AGCATGAGGTAACAATTCCATGTTGATCCGAATCAATCCATATGCTCCCATCTTTAATAATATTCCCGCTAAAAGCATACATGTACTATAATGTGCTTCC
CCATGGGTATCTGGTAACCACGTATGTAGGGGTATAATCGGCAATTTGACAGCATAAGCAATAAGGAAGCCAAAATATAAAAGTATTTCCAAGGTTGCAG
GGTATGATTGCTTAATTAATCTTTCCAAATTTAATCCTGGTTCATTGGAACCATATAAGCCCATACCCA