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Detailed information on CNT30221821


BLAST search results

BLAST vs Swiss-Prot:
sp|P58420|NU4C_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196709Hordeum vulgarePisum sativum53.6937.981.76669forward
CNT30184264Hordeum vulgareSecale cereale74.9654.6296.68934forward
CNT30394664Hordeum vulgareTriticum turgidum77.1399.1797.4961forward
CNT3017910Hordeum vulgareZea mays87.7245.3292.221093forward
CNT30610707Hordeum vulgareGossypium raimondii18.3860.4286.9229forward
CNT30231113Hordeum vulgareAnanas comosus47.1977.8887.41588forward
CNT3055427Hordeum vulgareAmborella trichopoda32.8314.8282.64409forward

Expression of CNT30221821

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RFYFYILFENPLSAFSKRSQKFEIDVIILFYLFLH*

>peptide 2 (31 aa)
MLPSLIIFPLKAYMYYNVLPHGYLVTTYVGV*

Sequence

>CNT30221821
AACGTTTTTACTTCTATATTTTATTTGAGAACCCCTTGAGCGCCTTCTCAAAGCGTTCTCAAAAATTCGAGATAGATGTAATTATACTTTTTTACTTATT
TCTGCATTAATAGAGCAGACTAGTAAAAAAACCAAACCTATTTAGGATAATAATTGGATAAGAGAGCCTCTACCGTGTCAACGGATAGGGAGAGAACAAA
ATCTGGATAAATACCAATTCCTATTACTGGTAAAAAGATACAGATTAAAATAAAGAGTTCTCGTGGTCCAGAATCCACAAAATTTGCGTTTGGAACATTA
AATAGCTTGTATCCATAGAACATCTCGCATAACATAGATAATAAATAAATAAGAGTTAATATCATTCCAATTGCCATTACAAAATTAATTAGTGTTTTTG
GCATTAACAAAAATTTTGGACTAGTAATTAGTCCAAATAATACTACTAATTCTGCGACAAAACCACTCATTCCTGGTAAGGCAAGAGAAGCCATTGAAAA
GCTACTAAACATGGTAAAACTTTTAGGCATTGGGATAGATATTCCTCCCAGTTCTTAGAGATAAACAAGACGCATTCTATCAGAAGCGGTTCCTGCCAAG
AAAAAAAGTGTAGCACCAATAAATTCATGGGATAATATTTGTAAAATAGCTCCATTGAGTCCAATGTTGGTTATGGAACCAATTCCAATAATTATGAAAC
GCATGTGAGATACATAGGAATAAGCTATTCTTTTTTTGAAATTTCGTTGACCAAGAGAAGTTGAAGCTGCATAGATTATTTGGATAGCTTCTATTATTAC
TAACCAGGGCGAAAATAGATAATGGGCATGAGGTAACAATTCCATGTTGATCCGAATCAATCCATATGCTCCCATCTTTAATAATATTCCCGCTAAAAGC
ATACATGTACTATAATGTGCTTCCCCATGGGTATCTGGTAACCACGTATGTAGGGGTATAATCGGCAATTTGACAGCATAAGGAATAAGGAAGCCAAAAT
ATAAAAGTATTTCCAAGGTTGTGGGGTATGATTGATTAATTAATCTTTCCAAATCTAATCCTGGTTCGTTGGAACCGTATAAGCCCATACCCAGAACTCC
GATTAAGAAAAAGATAGAACCGCCTACAGTATACAAAATAAACTTTGTAGCTCAATATAGACGCCTCTTTCCCCCCCACATGGATAAAAGTAAGTAAACA
GGAATTAATTCTAACTCCCACATGATGAAAAAAAGTAAAAGGTCNN