« Back to Triticum turgidum search


Detailed information on CNT30392006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179272Triticum turgidumSecale cereale26.7530.0686.92214forward
CNT30132520Triticum turgidumLolium perenne28.1224.7587.11225forward
CNT3013829Triticum turgidumZea mays26.7531.2983.64214forward
CNT30362697Triticum turgidumSorghum bicolor18.2526.480.82146forward
CNT30109025Triticum turgidumOryza longistaminata25.6224.4682.93205forward
CNT30577030Triticum turgidumOryza barthii29.6237.0984.39237forward
CNT30580795Triticum turgidumEchinochloa crusgalli33.1228.2283.02265forward

Expression of CNT30392006

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MTPSTPASTSLFSCGLSSSPFSNLLFTLTASSYLFPQRKRSQC*

>peptide 2 (49 aa)
MSGSLAPTSRTHCGIGMLTTSPTLPPHWWSDMMACSFSPASCTSLNNCL*

>peptide 3 (62 aa)
LIASCTLCPKKTLFASSKILSPCLIRLLEYHARKNLPCSVRYVPLSTKNRVLSGVSLYVPES*

>peptide 4 (86 aa)
FDCQLHSVSQEDLVCFIQDLVTVLDQIIGVPCKEKPPLLSEVCSVVHEESSSLRSVIVRSGIVRKFPLRMANHRCCCFEAGHQLQG*

>peptide 5 (92 aa)
MHQLEQLLVGGPVVDPRALGLHQAPPDVYHDAIHTGVYQPLQLRPELVTLLEPVVHAHRVQLFISTTKTKSMLVQMKYSFEASDLVDFTLLN*

>peptide 6 (36 aa)
MFRCPRRIEFSQECHCTFRNREEIPTQDGQPSLLLL*

Sequence

>CNT30392006
TTTGATTGCCAGTTGCACTCTGTGTCCCAAGAAGACCTTGTTTGCTTCATCCAAGATCTTGTCACCGTGCTTGATCAGATTATTGGAGTACCATGCAAGG
AAAAACCTCCCCTGCTCAGTGAGGTATGTTCCGTTGTCCACGAAGAATCGAGTTCTCTCAGGAGTGTCATTGTACGTTCCGGAATCGTGAGGAAATTCCC
ACTCAGGATGGCCAACCATCGCTGCTGCTGCTTTGAAGCTGGTCATCAACTCCAAGGGTGAGGTACTCAATGTTCCTAGTCCCGTGCTGGTCGGTGTAGA
AAATGTCCGGATCACTCGCACCGACGTCCCGCACCCACTGCGGGATCGGGATGTTGACGACGTCGCCGACGTTGCCACCGCACTGGTGGAGTGACATGAT
GGCCTGTAGCTTCAGTCCAGCCTCATGCACCAGCTTGAACAACTGCTTGTAGGCGGACCAGTCGTAGACCCTAGGGCCCTTGGCCTCCACCAAGCCCCAC
CAGACGTCTACCATGACGCCATCCACACCGGCGTCTACCAGCCTCTTCAGCTGCGGCCTGAGCTCGTCACCCTTCTCGAACCTGTTGTTCACGCTCACCG
CGTCCAGCTATTTATTTCCACAACGAAAACGAAGTCAATGTTAGTACAAATGAAATACTCATTTGAGGCCTCAGATCTTGTTGATTTCACCCTTTTGAAC
TAGAGTGTTACGAATGACGGTATTATATGTACACCATTGCATGTGTGAATTATATCCTTGAAATGGGTGTAGTGCATGGTGCTTAGAGATTGAGTTGAAT