Detailed information on CNT3013829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179272Zea maysSecale cereale32.8931.688.44225forward
CNT30392006Zea maysTriticum turgidum31.2926.7583.64214forward
CNT30554452Zea maysOryza glaberrima7.8925.7196.354forward
CNT30132520Zea maysLolium perenne33.9225.5287.93232forward
CNT30362245Zea maysSorghum bicolor9.3624.1596.8864forward
CNT30109025Zea maysOryza longistaminata30.8525.1887.2211forward
CNT30577030Zea maysOryza barthii34.2136.6286.75234forward
CNT30580727Zea maysEchinochloa crusgalli31.8723.1291.28218forward

Expression of CNT3013829

Peptides detected in this lncRNA

>peptide 1 (87 aa)
VPQLANCLTNNPLRSRSGGFRRQRRLRCSARAPRTVEGAELEGRRRRGARESLSSPRRHALTQLHLASQEDLVCFVQDLITVLDQFV*

>peptide 2 (82 aa)
APTGQLLDEQSSPFSQWRVSATAPPPMLGSSAAYSGGSGARRAKAQGGSRVAIQPTPSRTHAAAPCIPGRPCLLRPRSYHRA*

>peptide 3 (37 aa)
MPSLFCCCFEVCLQKPTHGPRLVCLCPTHGDESPFVL*

>peptide 4 (36 aa)
MFRYPRRTGSSQECHCTSQHHQANPTQDAQPLLLLL*

Sequence

>CNT3013829
GTGCCCCAACTGGCCAACTGCTTGACGAACAATCCTCTCCGTTCTCGCAGTGGCGGGTTTCGGCGACAGCGCCGCCTCCGATGCTCGGCTCGAGCGCCGC
GTACAGTGGAGGGAGCGGAGCTCGAAGGGCGAAGGCGCAGGGGGGCTCGCGAGTCGCTATCCAGCCCACGCCGTCACGCACTCACGCAGCTGCACCTTGC
ATCCCAGGAAGACCTTGTTTGCTTCGTCCAAGATCTTATCACCGTGCTTGATCAGTTTGTTTGAGTACCATGTGAGGAAGAACTTCCCCTTGTCGGTCTG
GTATGTTCCGTTATCCGCGAAGAACTGGGTCTTCTCAGGAGTGTCATTGTACGTCCCAGCATCATCAGGCAAATCCCACTCAGGATGCCCAGCCTCTTCT
GCTGCTGCTTTGAAGTCTGCTTGCAGAAACCAACGCACGGACCAAGACTAGTCTGTCTCTGCCCAACACATGGAGATGAATCCCCTTTTGTTTTGTAATA
ACCAAAAAAAAATACAGAAAAATATTTGTTTTTGGAAAGAGAACTCACTATGAATTCTCCAACGCCTGGGAACACCCATCCCTGACTCTGGGGATACGAT
GGGTACCTCATCTCGCCAGCAGGGCCAAGTCCCACCTCAATGTCCACAACGACACCAGCATCCAAGAAGTCTGCCATGTTCTCC