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Detailed information on CNT30109025


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179272Oryza longistaminataSecale cereale25.8930.4886.18217forward
CNT30392006Oryza longistaminataTriticum turgidum24.4625.6282.93205forward
CNT30554452Oryza longistaminataOryza glaberrima23.5193.8198.98197forward
CNT30132520Oryza longistaminataLolium perenne21.2419.5891.01178forward
CNT3013829Oryza longistaminataZea mays25.1830.8587.2211forward
CNT30362245Oryza longistaminataSorghum bicolor11.6936.9891.8498forward
CNT30577030Oryza longistaminataOryza barthii70.2992.1899.15589forward
CNT30580727Oryza longistaminataEchinochloa crusgalli24.721.9588.89207forward

Expression of CNT30109025

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSCTHYCKRVSDVAVQKGVALTRLACILLTKVLNVL*

>peptide 2 (36 aa)
MFHYPRRTGSSRECHCTLQHRRAIPIQDAQPLLLLL*

>peptide 3 (32 aa)
MCCSSVPPAARLIIGDLVCFIQDLVSMFYQLV*

>peptide 4 (30 aa)
VPAGGKGGGVVACQIWYCRNVVYTLLQESI*

>peptide 5 (61 aa)
MPSLCCFCFEICLQEICNWTMIVVFGHQPSHGGEYFYQQLIYKMRAAIRIFTLVKTKEHSL*

Sequence

>CNT30109025
ACGTCCCGGCAGGGGGTAAGGGAGGAGGGGTAGTTGCCTGTCAAATTTGGTACTGTCGTAATGTCGTGTACACACTATTGCAAGAGAGTATCTGATGTAG
CTGTACAGAAAGGGGTGGCACTCACCAGGTTAGCATGCATCCTCTTGACGAAAGTTTTGAATGTGCTGTAGTTCTGTCCCTCCAGCAGCTCGTCTGATAA
TCGGAGACCTTGTTTGCTTCATCCAAGATCTTGTCTCCATGTTTTATCAGCTTGTTTGAGTACCATGTGAGGAAGAACTTCCCCTTCTCAGTGACATATG
TTCCATTATCCGCGAAGAACCGGGTCTTCTCGGGAGTGTCATTGTACTCTCCAGCATCGTCGGGCAATTCCCATTCAGGATGCCCAGCCTTTGCTGCTTC
TGCTTTGAAATCTGCCTCCAGGAGATCTGCAATTGGACCATGATTGTTGTCTTTGGTCATCAGCCATCACATGGAGGAGAATATTTTTATCAACAACTTA
TTTATAAAATGAGGGCAGCCATAAGAATCTTTACTCTGGTAAAGACTAAAGAACACTCACTATGAATTCTCCTATGCCTGGGAACACCCATCCCTGGCTC
TGGGGGTAGGAAGGGTATCTCATCTCTCCAGCTGGACCAAGCCCCACCTCAATGTCCACAATGGCACCAGTATCCAAGAACTCTGCCATGTTCTCCCTGA
AGCTCTTCATGTAGTCAGCATACATCTGTCACAGCCACAGACAAGAGAAGAATGTGGTGGTGGGGCTTGCTTATCAGCTAAAACCTGGATGGCAGTTCTT
CCATGGAAGAGAGGCTGGTCATCCACTCCAAGGGTGAG