Detailed information on CNT30179272


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30392006Secale cerealeTriticum turgidum30.0626.7586.92214forward
CNT30132520Secale cerealeLolium perenne62.6449.0685.87446forward
CNT3013829Secale cerealeZea mays31.632.8988.44225forward
CNT30681431Secale cerealeTriticum urartu33.9936.2894.21242forward
CNT30109025Secale cerealeOryza longistaminata30.4825.8986.18217forward
CNT30577030Secale cerealeOryza barthii33.4337.2587.39238forward
CNT30580727Secale cerealeEchinochloa crusgalli30.222.888.37215forward

Expression of CNT30179272

Peptides detected in this lncRNA

>peptide 1 (52 aa)
SHLSLPLRHRVLIKRTRKAAPPRSPADEPLSRPQMRRRPIPSAVPFRRDLIR*

>peptide 2 (70 aa)
MCTRRPSSGARSRGAITIFVHPYPSLSARQLRPHSVIPQRAPSLYSASQEDLICLVQDLVAVLDQFVGVP*

>peptide 3 (49 aa)
LISPFLYDTASSLSARARPRPLGVQQTSLSLARRCGAGPFLPRFHSDGI*

Sequence

>CNT30179272
CTCTCATCTCTCCCTTCCTCTACGACACCGCGTCCTCATTAAGCGCACGCGCAAGGCCGCGCCCCCTCGGAGTCCAGCAGACGAGCCTCTCTCTCGCCCG
CAGATGCGGCGCCGGCCCATTCCTTCCGCGGTTCCATTCCGACGGGATCTGATCCGGTGACTATGTGCACGCGCCGGCCGTCGTCAGGAGCTCGTTCTCG
CGGCGCGATTACGATCTTCGTACACCCTTACCCGAGCCTCTCGGCCCGACAACTTCGTCCTCATTCGGTCATTCCTCAGCGGGCGCCTTCGCTGTACTCT
GCATCCCAAGAAGACCTTATTTGCCTCGTCCAAGATCTTGTCGCCGTGCTTGATCAGTTTGTTGGAGTACCATGAGAGGAAAAACTTCCCCTTCTCGGTG
AGGTATGTTCCGTTCTCCTTGAAGAATTGGGTTTTCTCGGGAGTGTCATTGTACTCTCCAGCATCATCAGGCAATTCCCACTCAGGATGGCCAGCCTTCG
CTGCTGCTTCTTTGAAGTCTGCTTCCAGTGCAGATCGTCACTCGGACAAAGATTAAACTGCCTTTGGTGATGATATGTTACATGTATAAGAGTATTTTGT
AAGAACAGAGGAGTATTTGTGGGAAAACACTCACGATGAATTCTCCGATGCCTGGGAAGACCCATCCCTGGCTCTGAGGATAGGACGGGTACCTCATTTC
TCCAGCTGGGCC