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Detailed information on CNT30580795


BLAST search results

BLAST vs Swiss-Prot:
sp|P55005|AMYB_MAIZE, E-value = 1e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30392006Echinochloa crusgalliTriticum turgidum28.2233.1283.02265forward
CNT30362697Echinochloa crusgalliSorghum bicolor1830.5692.31169forward

Expression of CNT30580795

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MTPSTPASVSFCSCALVSSAFSNVLSTVMTSSYTFHKRRVEETRKRAWGSIYTSG*

>peptide 2 (42 aa)
PVGVEDVGVGRANVTHPLWDGDVDDVADVAATLVARHDGLQL*

>peptide 3 (43 aa)
MIVLQARENFPGTEDRADDVLLSSFVTYSHVNVFRGAKMALAK*

>peptide 4 (30 aa)
MQVRGELMILVTTQSWQVLMSGAIVVGLSL*

>peptide 5 (49 aa)
MSGSAVPTSRTHCGMGMLTMSPTLPPHWWHDMMACSFSPASCTSLNTCL*

Sequence

>CNT30580795
CTCCGGTTGGTGTAGAAGATGTCGGGGTCGGCCGTGCCAACGTCACGCACCCACTGTGGGATGGGGATGTTGACGATGTCGCCGACGTTGCCGCCACACT
GGTGGCACGACATGATGGCCTGCAGCTTTAGCCCGGCCTCCTGCACCAGCTTGAACACCTGCTTGTAGGCGCTCCAGTCGTAGACCCCGGGCTCCTTGCC
TTCCACCAGCCCCCACCATACGTCGATCATGACCCCGTCAACGCCGGCCTCCGTCAGCTTCTGCAGCTGCGCCCTCGTCTCGTCGGCCTTCTCGAACGTG
TTGTCGACGGTGATGACATCCAGCTATACGTTCCACAAACGAAGAGTGGAAGAAACAAGAAAGAGAGCCTGGGGGTCTATTTATACATCGGGTTAGGTAG
AAGAGGGAGGGGAGCTCTTCTGCAGCGGCACACTTTCGGTTCGGCCGGTCCAAGCTGCTCTCACCCAGGAAATGCAGGTGCGCGGTGAACTGATGATTTT
GGTTACCACCCAGAGCTGGCAAGTTCTCATGAGTGGTGCTATCGTCGTCGGTTTGTCGCTGTGAATCTGTCATTGGTTGGCCTGCAGAGCCTTTGGTTTT
GACGGTCTGCCAATGATTGTACTGCAGGCACGTGAGAATTTTCCGGGTACTGAAGACCGAGCAGATGATGTTCTCCTGTCCTCGTTTGTCACATACTCAC
ATGTGAATGTCTTCAGAGGAGCAAAAATGGCATTAGCAAAGTGAGGTTGTAAATATATAGCATGGTGTGTTAAACTGTAAATACTGAGTAAATGTTAGTA
ACAGTATAGGGGCCACGCGGATGGCTGCTATAGCTTTTACGTGGCATAAGCATATGCTATTTATATTCATTTCATGCCTCTTTAGTTTTCCATGTCCTTT
ATAAGTTTAAGCTATATATCTGTTACTTTTATACCTTCA